[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#963052: marked as done (ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment)

Your message dated Tue, 14 Jul 2020 11:00:18 +0000
with message-id <E1jvIfa-000Eng-5u@fasolo.debian.org>
and subject line Bug#963052: fixed in pairtools 0.3.0-1
has caused the Debian Bug report #963052,
regarding ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
963052: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963052
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment
Package: wnpp
Owner: Antoni Villalonga <antoni@friki.cat>
Severity: wishlist

* Package name    : pairtools
  Version         : 0.3.0
  Upstream Author : Mirny Lab
* URL             : https://github.com/mirnylab/pairtools
* License         : MIT
  Programming Lang: Python
  Description     : Framework to process sequencing data from a Hi-C experiment
 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
 - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
   sequences of Hi-C DNA molecules
 - Sort .pairs files for downstream analyses
 - Detect, tag and remove PCR/optical duplicates 
 - Generate extensive statistics of Hi-C datasets
 - Select Hi-C pairs given flexibly defined criteria
 - Restore .sam alignments from Hi-C pairs

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/pairtools

--- End Message ---
--- Begin Message --- 
Source: pairtools
Source-Version: 0.3.0-1
Done: Antoni Villalonga <antoni@friki.cat>

We believe that the bug you reported is fixed in the latest version of
pairtools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 963052@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Antoni Villalonga <antoni@friki.cat> (supplier of updated pairtools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 18 Jun 2020 12:19:04 +0200
Source: pairtools
Binary: python3-pairtools python3-pairtools-dbg python3-pairtools-examples
Architecture: source amd64
Version: 0.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Antoni Villalonga <antoni@friki.cat>
Description:
 python3-pairtools - Framework to process sequencing data from a Hi-C experiment
 python3-pairtools-dbg - Process sequencing data from a Hi-C experiment (debug build)
 python3-pairtools-examples - Process sequencing data from a Hi-C experiment (examples)
Closes: 963052
Changes:
 pairtools (0.3.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #963052)
Checksums-Sha1:
 63a3da432ef9878ab9d499741b9f4b9857ec8df6 2290 pairtools_0.3.0-1.dsc
 2c4e5628485f97f7071579c034e753ee78f86fbf 414011 pairtools_0.3.0.orig.tar.gz
 6a65ba4eea3debef7c064c9bcc0e33bc9a76a8c0 4592 pairtools_0.3.0-1.debian.tar.xz
 f24e89be362359ae0aa90e18a9d53b54929f3a8e 8216 pairtools_0.3.0-1_amd64.buildinfo
 6cd5c7686224bbcfa1ede3826dc5682b71b804e7 809512 python3-pairtools-dbg_0.3.0-1_amd64.deb
 d89fe045a4380a2069cb561bd05e3691432ceb44 11724 python3-pairtools-examples_0.3.0-1_amd64.deb
 85f0e3123f3c716a32f40df92319ea80da5b2af9 145224 python3-pairtools_0.3.0-1_amd64.deb
Checksums-Sha256:
 5d88f4ec09cb926a3b63f7cc6f4fdaccde145477bd5670b1591e403eacd0182b 2290 pairtools_0.3.0-1.dsc
 2dce1e4b259c81c5e367c337143b73b1dac984cd73cc7ebb7be358a2c5ec3ed1 414011 pairtools_0.3.0.orig.tar.gz
 64c2f5a7b4bb40d103f94d9b3c308f03af12c28f13649687ab518d7d53551dcd 4592 pairtools_0.3.0-1.debian.tar.xz
 d7cfb2f97cf83d0a949afc2656c64a39639482222c26b4070b949cdfc420854e 8216 pairtools_0.3.0-1_amd64.buildinfo
 a5aec3ef016796246a4fc7aa2390379dab4b1538115d003af7c088be4217268f 809512 python3-pairtools-dbg_0.3.0-1_amd64.deb
 06216a59b83e8b4ff670b37f7232a52ca62a057cf7b92c9c83143af911ad6060 11724 python3-pairtools-examples_0.3.0-1_amd64.deb
 3299445211f7ef3794ed743cd77a2dc7e09bea729724f76927a726630c4c9716 145224 python3-pairtools_0.3.0-1_amd64.deb
Files:
 b15d88271518cada02829eced98b6c3a 2290 python optional pairtools_0.3.0-1.dsc
 be3a887a1006d06ced79ada0345e0644 414011 python optional pairtools_0.3.0.orig.tar.gz
 b0721573a20bf0630305b42b87574543 4592 python optional pairtools_0.3.0-1.debian.tar.xz
 c4dec624c8d76ce43ae039217972930b 8216 python optional pairtools_0.3.0-1_amd64.buildinfo
 2c72cf3c494bba54d63f3b0bb4d79b9e 809512 debug optional python3-pairtools-dbg_0.3.0-1_amd64.deb
 91266f940178d722484ebf01030078ef 11724 python optional python3-pairtools-examples_0.3.0-1_amd64.deb
 957a24ee2749b25feb2d6d96d32ae2da 145224 python optional python3-pairtools_0.3.0-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
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=OmPW
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: