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Bug#963047: marked as done (ITP: ngmlr -- CoNvex Gap-cost alignMents for Long Reads)

Your message dated Mon, 13 Jul 2020 10:00:21 +0000
with message-id <E1juvG1-000DXw-Tn@fasolo.debian.org>
and subject line Bug#963047: fixed in ngmlr 0.2.7+dfsg-1
has caused the Debian Bug report #963047,
regarding ITP: ngmlr -- CoNvex Gap-cost alignMents for Long Reads
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
963047: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963047
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra <npatra974@gmail.com>
X-Debbugs-CC: debian-devel@lists.debian.org


* Package name    : ngmlr
  Version         : 0.2.7
  Upstream Author : Philipp Rescheneder
* URL             : https://github.com/philres/ngmlr
* License         : Expat
  Programming Lang: C++
  Description     : CoNvex Gap-cost alignMents for Long Reads

 ngmlr is a long-read mapper designed to sensitively
 align PacBilo or Oxford Nanopore to (large) reference
 genomes. It was designed to quickly and correctly
 align the reads, including those spanning (complex)
 structural variations. Ngmlr uses an SV aware k-mer
 search to find approximate mapping locations for a
 read and then a banded Smith-Waterman alignment
 algorithm to compute the final alignment. Ngmlr
 uses a convex gap cost model that penalizes gap
 extensions for longer gaps less than for shorter
 ones to compute precise alignments.

I take the responsibility to maintain this package.


--- End Message ---
--- Begin Message --- 
Source: ngmlr
Source-Version: 0.2.7+dfsg-1
Done: Nilesh Patra <npatra974@gmail.com>

We believe that the bug you reported is fixed in the latest version of
ngmlr, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 963047@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <npatra974@gmail.com> (supplier of updated ngmlr package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 17 Jun 2020 00:40:24 +0530
Source: ngmlr
Binary: ngmlr ngmlr-dbgsym
Architecture: source amd64
Version: 0.2.7+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
 ngmlr      - CoNvex Gap-cost alignMents for Long Reads
Closes: 963047
Changes:
 ngmlr (0.2.7+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #963047)
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Files:
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 685874d736f1f967b49f906d89b2d2cd 667520 science optional ngmlr_0.2.7+dfsg.orig.tar.gz
 37b27404cd10f3edc60a91b6cac0438d 5684 science optional ngmlr_0.2.7+dfsg-1.debian.tar.xz
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 583800e7bf9abc1c80794a2326192d9d 6821 science optional ngmlr_0.2.7+dfsg-1_amd64.buildinfo
 72604a6fec55ccff38b7c17ac24d24e6 671244 science optional ngmlr_0.2.7+dfsg-1_amd64.deb

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--- End Message ---
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