Bug#963758: ITP: plasmidid -- mapping-based, assembly-assisted plasmid identification tool
Package: wnpp
Severity: wishlist
Subject: ITP: plasmidid -- mapping-based, assembly-assisted plasmid identification tool
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : plasmidid
Version : 1.6.3
Upstream Author : Luis Sian, Miguel Julia, Pedro Scampoy, Sara Monzón
* URL : https://github.com/BU-ISCIII/plasmidID
* License : GPL-3
Programming Lang: Python
Description : mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification
tool that analyzes and gives graphic solution for plasmid
identification.
.
PlasmidID is a computational pipeline that maps Illumina reads over
plasmid database sequences. The k-mer filtered, most covered
sequences are clustered by identity to avoid redundancy and the
longest are used as scaffold for plasmid reconstruction. Reads are
assembled and annotated by automatic and specific annotation. All
information generated from mapping, assembly, annotation and local
alignment analyses is gathered and accurately represented in a
circular image which allow user to determine plasmidic composition in
any bacterial sample.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/plasmidid
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