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Bug#958951: marked as done (ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads)

Your message dated Thu, 11 Jun 2020 15:10:18 +0000
with message-id <E1jjOqQ-000Gl9-IA@fasolo.debian.org>
and subject line Bug#958951: fixed in python-pauvre 0.2.1-1
has caused the Debian Bug report #958951,
regarding ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
958951: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958951
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : python-pauvre
  Version         : 0.1924
  Upstream Author : Darrin T. Schultz
* URL             : https://github.com/conchoecia/pauvre
* License         : GPL-3+
  Programming Lang: Python
  Description     : QC and genome browser plotting Oxford Nanopore and PacBio long reads
 Pauvre is a plotting package designed for nanopore and PacBio long reads.
 .
 This package currently hosts four scripts for plotting and/or printing stats.
 .
  pauvre marginplot
     Takes a fastq file as input and outputs a marginal histogram with a
     heatmap.
  pauvre stats
     Takes a fastq file as input and prints out a table of stats, including
     how many basepairs/reads there are for a length/mean quality cutoff.
     This is also automagically called when using pauvre marginplot
  pauvre redwood
     Method of representing circular genomes. A redwood plot contains long
     reads as "rings" on the inside, a gene annotation "cambrium/phloem",
     and a RNAseq "bark". The input is .bam files for the long reads and
     RNAseq data, and a .gff file for the annotation.
  pauvre synteny
     Makes a synteny plot of circular genomes. Finds the most parsimonius
     rotation to display the synteny of all the input genomes with the
     fewest crossings-over. Input is one .gff file per circular genome
     and one directory of gene alignments.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-pauvre

--- End Message ---
--- Begin Message --- 
Source: python-pauvre
Source-Version: 0.2.1-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-pauvre, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 958951@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated python-pauvre package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 02 May 2020 10:08:54 +0200
Source: python-pauvre
Binary: python3-pauvre
Architecture: source all
Version: 0.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python3-pauvre - QC and genome browser plotting Oxford Nanopore and PacBio long re
Closes: 958951
Changes:
 python-pauvre (0.2.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #958951)
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