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Bug#958711: marked as done (ITP: python-nanoget -- extract information from Oxford Nanopore sequencing data and alignments)

Your message dated Thu, 11 Jun 2020 15:10:17 +0000
with message-id <E1jjOqP-000Gke-Q9@fasolo.debian.org>
and subject line Bug#958711: fixed in python-nanoget 1.12.1-1
has caused the Debian Bug report #958711,
regarding ITP: python-nanoget -- extract information from Oxford Nanopore sequencing data and alignments
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
958711: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958711
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: python-nanoget -- extract information from Oxford Nanopore sequencing data and alignments
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : python-nanoget
  Version         : 1.12.1
  Upstream Author : Wouter De Coster <decosterwouter@gmail.com>
* URL             : https://github.com/wdecoster/nanoget
* License         : GPL-3+
  Programming Lang: Python
  Description     : extract information from Oxford Nanopore sequencing data and alignments
 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-nanoget

--- End Message ---
--- Begin Message --- 
Source: python-nanoget
Source-Version: 1.12.1-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-nanoget, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 958711@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated python-nanoget package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 25 Apr 2020 08:38:21 +0200
Source: python-nanoget
Binary: python3-nanoget python3-nanoget-examples
Architecture: source all
Version: 1.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python3-nanoget - extract information from Oxford Nanopore sequencing data and alig
 python3-nanoget-examples - example data for python3-nanoget (dealing with Oxford Nanopore da
Closes: 958711
Changes:
 python-nanoget (1.12.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #958711)
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--- End Message ---
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