Bug#962438: ITP: pore-c -- processing data from an ONT poreC run
Package: wnpp
Severity: wishlist
Subject: ITP: pore-c -- processing data from an ONT poreC run
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : pore-c
Version : 0.2.0~rc1
Upstream Author : Copyright: Matthew Pendleton <Matthew.Pendleton@nanoporetech.com>
* URL : https://github.com/nanoporetech/pore-c
* License : MPL-2.0
Programming Lang: Python
Description : processing data from an ONT poreC run
This package is designed to analyse the data from multi-contact pore-C
reads. It is similar to the pairtools package in scope, however it is
specifically designed to handle multi-contact reads (aka c-walks). It
carries out the following operations:
.
* pre-processing a reference genome to generate auxiliary files used
in downstream analyses
* creating virtual digests of the reference genome
* processing read-sorted BAM files to filter spurious alignments,
detect ligation junctions and assign fragments
* converting the resulting contacts to a pairs format and a
COO-formatted matrix compatible with Cooler for downstream processing.
Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/med-team/pore-c
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