Bug#958951: marked as done (ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads)
Your message dated Wed, 29 Apr 2020 10:55:50 +0200
with message-id <20200429085550.GL1150@an3as.eu>
and subject line Close duplicate (Was: Bug#958951: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads)
has caused the Debian Bug report #958951,
regarding ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads
to be marked as done.
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958951: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958951
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : python-pauvre
Version : 0.1924
Upstream Author : Darrin T. Schultz
* URL : https://github.com/conchoecia/pauvre
* License : GPL-3+
Programming Lang: Python
Description : QC and genome browser plotting Oxford Nanopore and PacBio long reads
Pauvre is a plotting package designed for nanopore and PacBio long reads.
.
This package currently hosts four scripts for plotting and/or printing stats.
.
pauvre marginplot
Takes a fastq file as input and outputs a marginal histogram with a
heatmap.
pauvre stats
Takes a fastq file as input and prints out a table of stats, including
how many basepairs/reads there are for a length/mean quality cutoff.
This is also automagically called when using pauvre marginplot
pauvre redwood
Method of representing circular genomes. A redwood plot contains long
reads as "rings" on the inside, a gene annotation "cambrium/phloem",
and a RNAseq "bark". The input is .bam files for the long reads and
RNAseq data, and a .gff file for the annotation.
pauvre synteny
Makes a synteny plot of circular genomes. Finds the most parsimonius
rotation to display the synteny of all the input genomes with the
fewest crossings-over. Input is one .gff file per circular genome
and one directory of gene alignments.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/python-pauvre
--- End Message ---
--- Begin Message ---
That's just a dupllicate of #958996 - simply closing.
--- End Message ---
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