Bug#958706: ITP: python-nanomath -- simple math function for other Oxford Nanopore processing scripts
Package: wnpp
Severity: wishlist
Subject: ITP: python-nanomath -- simple math function for other Oxford Nanopore processing scripts
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : python-nanomath
Version : 0.23.1
Upstream Author : Wouter De Coster <decosterwouter@gmail.com>
* URL : https://github.com/wdecoster/nanomath
* License : GPL-3+
Programming Lang: Python
Description : simple math function for other Oxford Nanopore processing scripts
This Python3 module provides a few simple math and statistics functions for
other scripts processing Oxford Nanopore sequencing data.
.
* Calculate read N50 from a set of lengths get_N50(readlenghts)
* Remove extreme length outliers from a dataset
remove_length_outliers(dataframe, columname)
* Calculate the average Phred quality of a read ave_qual(qualscores)
* Write out the statistics report after calling readstats function
write_stats(dataframe, outputname)
* Compute a number of statistics, return a dictionary
calc_read_stats(dataframe)
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/python-nanomath
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