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Bug#939537: marked as done (ITP: vg -- tools for working with genome variation graphs)



Your message dated Tue, 11 Feb 2020 19:00:12 +0000
with message-id <E1j1alY-0008IU-38@fasolo.debian.org>
and subject line Bug#939537: fixed in vg 1.21.0+ds2-1
has caused the Debian Bug report #939537,
regarding ITP: vg -- tools for working with genome variation graphs
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
939537: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=939537
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: vg -- tools for working with genome variation graphs
Package: wnpp
Owner: Michael R. Crusoe <michael.crusoe@gmail.com>
Severity: wishlist

* Package name    : vg
  Version         : 1.18.0+ds
  Upstream Author : Copyright: © 2014 Erik Garrison
* URL             : https://github.com/vgteam/vg#vg
* License         : MIT
  Programming Lang: C
  Description     : tools for working with genome variation graphs
 variation graph data structures, interchange formats, alignment, genotyping,
 and variant calling methods
 .
 Variation graphs provide a succinct encoding of the sequences of many genomes.
 A variation graph (in particular as implemented in vg) is composed of:
 .
 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
   models and transcripts) as walks through nodes connected by edges
 .
 This model is similar to a number of sequence graphs that have been used in
 assembly and multiple sequence alignment. Paths provide coordinate systems
 relative to genomes encoded in the graph, allowing stable mappings to be
 produced even if the structure of the graph is changed.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/vg

--- End Message ---
--- Begin Message ---
Source: vg
Source-Version: 1.21.0+ds2-1

We believe that the bug you reported is fixed in the latest version of
vg, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 939537@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.crusoe@gmail.com> (supplier of updated vg package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 13 Jan 2020 11:32:02 +0100
Source: vg
Binary: vg vg-dbgsym vg-docs
Architecture: source amd64 all
Version: 1.21.0+ds2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
 vg         - tools for working with genome variation graphs
 vg-docs    - tools for working with genome variation graphs -- docs
Closes: 939537
Changes:
 vg (1.21.0+ds2-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #939537)
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Files:
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 40e9c0f9df6f0909b8c20679336579aa 82418072 science optional vg_1.21.0+ds2.orig.tar.xz
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--- End Message ---

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