Bug#975920: ITP: pangolin -- Phylogenetic Assignment of Named Global Outbreak LINeages
Package: wnpp
Severity: wishlist
Subject: ITP: pangolin -- Phylogenetic Assignment of Named Global Outbreak LINeages
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : pangolin
Version : 2.0.8
Upstream Author : Áine O'Toole, JT McCrone, Emily Scher
* URL : https://github.com/cov-lineages/pangolin
* License : GPL-3+
Programming Lang: Python
Description : Phylogenetic Assignment of Named Global Outbreak LINeages
Pangolin runs a multinomial logistic regression model trained against
lineage assignments based on GISAID data.
.
Legacy pangolin runs using a guide tree and alignment hosted at
cov-lineages/lineages. Some of this data is sourced from GISAID, but
anonymised and encrypted to fit with guidelines. Appropriate permissions
have been given and acknowledgements for the teams that have worked to
provide the original SARS-CoV-2 genome sequences to GISAID are also
hosted here.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/pangolin
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