Bug#970572: ITP: preseq -- determine redundancy in RNAseq experiments
Package: wnpp
Severity: wishlist
Subject: ITP: preseq -- determine redundancy in RNAseq experiments
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : preseq
Version : 3.0.2
Upstream Author : Timothy Daley
* URL : http://smithlabresearch.org/software/preseq/
* License : GPL-3.0+
Programming Lang: C++
Description : determine redundancy in RNAseq experiments
The preseq package is aimed at predicting and estimating the complexity
of a genomic sequencing library, equivalent to predicting and estimating
the number of redundant reads from a given sequencing depth and how
many will be expected from additional sequencing using an initial
sequencing experiment. The estimates can then be used to examine the
utility of further sequencing, optimize the sequencing depth, or to
screen multiple libraries to avoid low complexity samples.
.
Preseq package also predicts the genomic coverage for single-cell
DNA sequencing experiments with the more recently added gc_extrap
functionality.
Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/med-team/preseq
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