Bug#962760: marked as done (ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries)
Your message dated Fri, 24 Jul 2020 14:10:30 +0000
with message-id <E1jyyP8-0005HT-ET@fasolo.debian.org>
and subject line Bug#962760: fixed in python-ncls 0.0+git20200225.f9894b0+ds-1
has caused the Debian Bug report #962760,
regarding ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
962760: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962760
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries
- From: Steffen Moeller <moeller@debian.org>
- Date: Sat, 13 Jun 2020 17:30:07 +0200
- Message-id: <159206220776.284293.17622145694520558638.reportbug@steffen-laptop-debian.ffoh>
Package: wnpp
Severity: wishlist
Subject: ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : biocore-ntnu-ncls
Version : 0.0+git20200225.f9894b0
Upstream Author : Endre Bakken Stovner
* URL : https://github.com/biocore-ntnu/ncls
* License : BSD-3-Clause
Programming Lang: C
Description : datastructure for interval overlap queries
The Nested Containment List is a datastructure for interval overlap
queries, like the interval tree. It is usually an order of magnitude
faster than the interval tree both for building and query lookups.
.
The implementation here is a revived version of the one used in the
now defunct PyGr library, which died of bitrot. It was now made less
memory-consuming and wrapper functions allow batch-querying
the NCLS for further speed gains.
.
This package was implemented to be the cornerstone of the PyRanges project,
but was made available to the Python community as a stand-alone library.
Remark: This package is maintained by Debian Med Packaging Team at
https://github.com/biocore-ntnu/ncls
--- End Message ---
--- Begin Message ---
Source: python-ncls
Source-Version: 0.0+git20200225.f9894b0+ds-1
Done: Steffen Moeller <moeller@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-ncls, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 962760@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated python-ncls package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 30 Apr 2020 22:57:32 +0200
Source: python-ncls
Binary: python3-ncls python3-ncls-dbgsym
Architecture: source amd64
Version: 0.0+git20200225.f9894b0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
python3-ncls - datastructure for interval overlap queries
Closes: 962760
Changes:
python-ncls (0.0+git20200225.f9894b0+ds-1) unstable; urgency=medium
.
* New upstream version (Closes: #962760).
Checksums-Sha1:
cf1e7e5ef4c84e8593201f01c2c720bc0235f16b 2264 python-ncls_0.0+git20200225.f9894b0+ds-1.dsc
7a65bd781d5ae41dc3809d84600117f4c72701ff 25248 python-ncls_0.0+git20200225.f9894b0+ds.orig.tar.xz
a70b3a9bf2a529cdd73b38dc45bbeb744aebcda2 2860 python-ncls_0.0+git20200225.f9894b0+ds-1.debian.tar.xz
eb8c360a21ce4139fd10c9e768c78317d7d7bcd8 7223 python-ncls_0.0+git20200225.f9894b0+ds-1_amd64.buildinfo
08a566075e2ffb65c183b05b758536e81fa40ab8 1458124 python3-ncls-dbgsym_0.0+git20200225.f9894b0+ds-1_amd64.deb
4ad496b4eea145142d08e38bc5a5bafcf9fb1fa4 381712 python3-ncls_0.0+git20200225.f9894b0+ds-1_amd64.deb
Checksums-Sha256:
6f6856b84b4779d18a8219681e0f36dc9dc1d3f5ec1443e769cbe0764f5c94e2 2264 python-ncls_0.0+git20200225.f9894b0+ds-1.dsc
604b114c3a20fc6a378f71b1d824cbbadd97b5694db71a728df9a9da06daea48 25248 python-ncls_0.0+git20200225.f9894b0+ds.orig.tar.xz
be33402f2ecd93f9b3a23cab4e5079f56a5f96e0227d7c7b515b3d4e8918a56f 2860 python-ncls_0.0+git20200225.f9894b0+ds-1.debian.tar.xz
36d493006f63727b2504b11e655ac2804c3ed784cde171b7558ca56f6b292ea7 7223 python-ncls_0.0+git20200225.f9894b0+ds-1_amd64.buildinfo
2b75c69cf1ca1d2fd29195b5a3b21b6a8a77830451d2f07cb68ca03dc2c6788f 1458124 python3-ncls-dbgsym_0.0+git20200225.f9894b0+ds-1_amd64.deb
1ec194c43678899a2ea2293a5c1187fdb74d43cd18a1e3fbfb77bc5c50fac90e 381712 python3-ncls_0.0+git20200225.f9894b0+ds-1_amd64.deb
Files:
2f86387101e923c988ab4d25a8abb6e9 2264 science optional python-ncls_0.0+git20200225.f9894b0+ds-1.dsc
9691eeaee39d0963fe1ebcd2be9b9597 25248 science optional python-ncls_0.0+git20200225.f9894b0+ds.orig.tar.xz
b218634ce1ad12e9a0af7bcc789579f4 2860 science optional python-ncls_0.0+git20200225.f9894b0+ds-1.debian.tar.xz
51dd3268740e022c181fbed46fc923bf 7223 science optional python-ncls_0.0+git20200225.f9894b0+ds-1_amd64.buildinfo
7ec5045265fb9fe0b68c93431accf673 1458124 debug optional python3-ncls-dbgsym_0.0+git20200225.f9894b0+ds-1_amd64.deb
cb30200c7812afa9a9460e4df3c3b0b5 381712 python optional python3-ncls_0.0+git20200225.f9894b0+ds-1_amd64.deb
-----BEGIN PGP SIGNATURE-----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=aASe
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: