Bug#965366: marked as done (ITP: pique -- software pipeline for performing genome wide association studies)
Your message dated Wed, 22 Jul 2020 21:00:15 +0000
with message-id <E1jyLqZ-0000dS-6n@fasolo.debian.org>
and subject line Bug#965366: fixed in pique 1.0-1
has caused the Debian Bug report #965366,
regarding ITP: pique -- software pipeline for performing genome wide association studies
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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965366: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965366
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: pique -- software pipeline for performing genome wide association studies
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : pique
Version : 1.0
Upstream Author : A. J. Travis and A. Douglas
* URL : https://github.com/tony-travis/PIQUE/
* License : GPL-3.0
Programming Lang: (C, C++, C#, Perl, Python, etc.)
Description : software pipeline for performing genome wide association studies
PIQUE is a software pipeline for performing genome wide association
studies (GWAS). The main function of PIQUE is to provide ‘convenience’
wrappers that allow users to perform GWAS using the popular program
EMMAX (Kang et al., 2010) without the need to be familiar with all of
the software tools used to generate the required EMMAX input files.
PIQUE will also perform a number of quality control steps prior to
running EMMAX, ensuring that the various input data files are in the
correct format. PIQUE proceeds in two main stages although there are
multiple entry and exit points from which the pipeline can be run. The
first stage consists of running the “pique-input” program, which can
read genotype and phenotype information in several different formats and
generates all the necessary input files required to run EMMAX. The
second step in the pipeline uses the “pique-run” program to actually run
EMMAX using the files generated by “pique-input” (or pre-existing
user-supplied input files) to perform the GWAS and output the analysis
summary files.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/pique
--- End Message ---
--- Begin Message ---
Source: pique
Source-Version: 1.0-1
Done: Andreas Tille <tille@debian.org>
We believe that the bug you reported is fixed in the latest version of
pique, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 965366@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated pique package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 20 Jul 2020 23:05:27 +0200
Source: pique
Binary: pique pique-doc
Architecture: source all
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
pique - software pipeline for performing genome wide association studies
pique-doc - software pipeline for performing genome wide association studies
Closes: 965366
Changes:
pique (1.0-1) unstable; urgency=medium
.
* Initial release (Closes: #965366)
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