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Bug#963950: marked as done (ITP: trf -- locate and display tandem repeats in DNA sequences)

Your message dated Wed, 15 Jul 2020 10:00:27 +0000
with message-id <E1jveDD-000ECj-33@fasolo.debian.org>
and subject line Bug#963950: fixed in trf 4.09.1-1
has caused the Debian Bug report #963950,
regarding ITP: trf -- locate and display tandem repeats in DNA sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
963950: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963950
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: trf -- locate and display tandem repeats in DNA sequences
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : trf
  Version         : 4.09.1
  Upstream Author : Gary Benson <gbenson@bu.edu>,
* URL             : https://tandem.bu.edu/trf/trf.html
* License         : AGPL-3+
  Programming Lang: C
  Description     : locate and display tandem repeats in DNA sequences
 A tandem repeat in DNA is two or more adjacent, approximate copies of a
 pattern of nucleotides. Tandem Repeats Finder is a program to locate and
 display tandem repeats in DNA sequences. In order to use the program,
 the user submits a sequence in FASTA format. There is no need to specify
 the pattern, the size of the pattern or any other parameter. The output
 consists of two files: a repeat table file and an alignment file. The
 repeat table, viewable in a web browser, contains information about each
 repeat, including its location, size, number of copies and nucleotide
 content. Clicking on the location indices for one of the table entries
 opens a second browser page that shows an alignment of the copies
 against a consensus pattern. The program is very fast, analyzing
 sequences on the order of .5Mb in just a few seconds. Submitted
 sequences may be of arbitrary length. Repeats with pattern size in the
 range from 1 to 2000 bases are detected.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/trf

--- End Message ---
--- Begin Message --- 
Source: trf
Source-Version: 4.09.1-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
trf, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 963950@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated trf package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 29 Jun 2020 13:26:43 +0200
Source: trf
Binary: trf trf-dbgsym trf-examples
Architecture: source amd64 all
Version: 4.09.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 trf        - locate and display tandem repeats in DNA sequences
 trf-examples - locate and display tandem repeats in DNA sequences (examples)
Closes: 963950
Changes:
 trf (4.09.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #963950)
Checksums-Sha1:
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Files:
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 1631ec81632fec14ffa8a0e99eb80781 18640 science optional trf-examples_4.09.1-1_all.deb
 d38d5c2dc81dfae2bb52d6c3359bd911 5956 science optional trf_4.09.1-1_amd64.buildinfo
 0f3a9526e6c79962a4a0dd85e8d1349c 55544 science optional trf_4.09.1-1_amd64.deb

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--- End Message ---
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