Bug#963052: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment

[Andreas Tille <andreas@an3as.eu>]

Cool!
Please push and I'll have a look if needed.
vt is building for uploading.
Kind regards, Andreas.

On Thu, Jun 18, 2020 at 01:34:11PM +0200, Antoni Villalonga wrote:
> Package: wnpp
> Severity: wishlist
> 
> Subject: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment
> Package: wnpp
> Owner: Antoni Villalonga <antoni@friki.cat>
> Severity: wishlist
> 
> * Package name    : pairtools
>   Version         : 0.3.0
>   Upstream Author : Mirny Lab
> * URL             : https://github.com/mirnylab/pairtools
> * License         : MIT
>   Programming Lang: Python
>   Description     : Framework to process sequencing data from a Hi-C experiment
>  Simple and fast command-line framework to process sequencing data from a Hi-C
>  experiment.
>  .
>  Process pair-end sequence alignments and perform the following operations:
>  .
>  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
>    sequences of Hi-C DNA molecules
>  - Sort .pairs files for downstream analyses
>  - Detect, tag and remove PCR/optical duplicates 
>  - Generate extensive statistics of Hi-C datasets
>  - Select Hi-C pairs given flexibly defined criteria
>  - Restore .sam alignments from Hi-C pairs
> 
> Remark: This package is maintained by Debian Med Packaging Team at
>    https://salsa.debian.org/med-team/pairtools
> 
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