Bug#939537: ITP: vg -- tools for working with genome variation graphs
Hi Michael,
On Mon, Jan 13, 2020 at 04:47:02PM +0100, Michael Crusoe wrote:
> I've merged and pushed all my changes, the build finishes and the regular +
> autopkgtests pass.
Sounds good.
> TODO:
> 1. Send more patches upstream
> 2. Review the following patches and see if we can eliminate even more code
> copies:
> #use_packaged_vcflib # 1.0.0+dfsg-1 is incompatible with the bundled htslib
> #use_packaged_htslib # waiting on
> https://github.com/samtools/htslib/pull/904/files or similiar to be merged
> & new htslib release
> #use_packaged_vw # debian package is out of date, missing
> array_parameters.h, and not in testing/stable
> #use_packaged_sdsl # fails many tests, local copy is a newer snapshot than
> Debian's
> #use_packaged_protobuf ?
Sounds like tough work. As I said I have no specific interest and for
the moment I'm in continuous bug fixing mode (unfortunately we have even
after advent a lot of open bugs :-(). So no immediate help from my side
except if you tell me its very important and we need vg urgently.
Kind regards
Andreas.
--
http://fam-tille.de
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