Bug#940061: marked as done (ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data)
Your message dated Sat, 09 Nov 2019 20:12:22 +0000
with message-id <E1iTX5q-000CV8-Um@fasolo.debian.org>
and subject line Bug#940061: fixed in r-bioc-dada2 1.12.1+dfsg-1
has caused the Debian Bug report #940061,
regarding ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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940061: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=940061
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--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data
- From: Steffen Moeller <moeller@debian.org>
- Date: Wed, 11 Sep 2019 22:54:47 +0200
- Message-id: <156823528728.16273.1706155751082590807.reportbug@steffen-laptop-debian.ffoh>
Package: wnpp
Severity: wishlist
Subject: ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : r-bioc-dada2
Version : 1.12.1
Upstream Author : Benjamin Callahan <benjamin.j.callahan@gmail.com>
* URL : https://bioconductor.org/packages/dada2/
* License : LGPL-3
Programming Lang: GNU R
Description : sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-bioc-dada2
--- End Message ---
--- Begin Message ---
Source: r-bioc-dada2
Source-Version: 1.12.1+dfsg-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-dada2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 940061@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated r-bioc-dada2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 11 Sep 2019 22:48:09 +0200
Source: r-bioc-dada2
Binary: r-bioc-dada2 r-bioc-dada2-dbgsym
Architecture: source amd64
Version: 1.12.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
r-bioc-dada2 - sample inference from amplicon sequencing data
Closes: 940061
Changes:
r-bioc-dada2 (1.12.1+dfsg-1) unstable; urgency=medium
.
* Initial release (closes: #940061)
Second upload fixing the copyright - thanks go to
ftpadmin Thorsten for spotting this.
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