Bug#940252: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data
Package: wnpp
Severity: wishlist
Subject: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data
Package: wnpp
Owner: Michael R. Crusoe <michael.crusoe@gmail.com>
Severity: wishlist
* Package name : libbio-db-gff-perl
Version : 1.7.3
Upstream Author : Copyright: (c) 2001-2003, 2005, 2008 Cold Spring Harbor Laboratory
* URL : https://metacpan.org/release/Bio-DB-GFF
* License : Artistic
Programming Lang: Perl
Description : Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
.
- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
Remark: This package is maintained by Michael R. Crusoe at
https://salsa.debian.org/med-team/libbio-db-gff-perl
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