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Bug#783833: marked as done (RFP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex)

Your message dated Mon, 21 Jan 2019 22:00:11 +0000
with message-id <E1glhc3-0005Wb-6z@fasolo.debian.org>
and subject line Bug#783833: fixed in obitools 1.2.12+dfsg-1
has caused the Debian Bug report #783833,
regarding RFP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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783833: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=783833
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <osallou@debian.org>

* Package name    : python-obitools
  Version         : 1.1.16
  Upstream Author : Eric Coissac
* URL             : http://metabarcoding.org//obitools/
* License         : CeCILL-V2
  Programming Lang: Python
  Description     : set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

The OBITools package is a set of programs specifically designed for analyzing NGS data in a DNA metabarcoding context, taking into account taxonomic information.
OBITools enrich the Unix command line interface with a set of new commands dedicated to NGS data processing. Most of them have a name starting with the obi prefix. They automatically recognize the input file format amongst most of the standard sequence file formats (i.e. fasta, fastq, EMBL, and GenBank formats). Nevertheless, options are available to enforce some format specificity such as the encoding system used in fastq files for quality codes. Most of the basic Unix commands have their OBITools equivalent (e.g. obihead vs head, obitail vs tail, obigrep vs grep), which is convenient for scientists familiar with Unix. The main difference between any standard Unix command and its OBITools counterpart is that the treatment unit is no longer the text line but the sequence record. As a sequence record is more complex than a single text line, the OBITools programs have many supplementary options compared to their Unix equivalents.

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--- Begin Message ---
Source: obitools
Source-Version: 1.2.12+dfsg-1

We believe that the bug you reported is fixed in the latest version of
obitools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 783833@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
Andreas Tille <tille@debian.org> (supplier of updated obitools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)

Hash: SHA256

Format: 1.8
Date: Mon, 21 Jan 2019 21:25:12 +0100
Source: obitools
Binary: obitools
Architecture: source amd64
Version: 1.2.12+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
 obitools   - programs to analyze NGS data in a DNA metabarcoding context
Closes: 783833
 obitools (1.2.12+dfsg-1) unstable; urgency=low
   * Initial release (Closes: #783833)
 9c47197fa34372ef04a8372fe772f9b69b5fba34 2107 obitools_1.2.12+dfsg-1.dsc
 5aba83c365c60bb4c14c6c5e452f005f84b05b35 241332 obitools_1.2.12+dfsg.orig.tar.xz
 035ca19d05084f90cf6d2382ea65389261b92819 18316 obitools_1.2.12+dfsg-1.debian.tar.xz
 d4d639e875945f07f3854b192e75da3984e7998b 2559900 obitools-dbgsym_1.2.12+dfsg-1_amd64.deb
 69f79c294a9d4da5eb51e4c0cc786d0cd08c7c4a 8219 obitools_1.2.12+dfsg-1_amd64.buildinfo
 af1ecb56f6731e31201eb9a22360dda81cece6a4 909078 obitools_1.2.12+dfsg-1_amd64.deb
 2adeaf6fe786bfa649997f3cb85ff6f1f1cbe71b70c6ef9294c378874116184b 2107 obitools_1.2.12+dfsg-1.dsc
 cbeabfb0314f710091bb50e204196134f246412deb8311bb1c8f5e1ebaf6750c 241332 obitools_1.2.12+dfsg.orig.tar.xz
 b92f190ffc2c218db7ce80ff494071867a29cd144fbc5a10eb9edf02f3779676 18316 obitools_1.2.12+dfsg-1.debian.tar.xz
 7015deefa5bf5b6c88f02d4a692ca7fe0454a6287d3f37005e8cc003fc8f8999 2559900 obitools-dbgsym_1.2.12+dfsg-1_amd64.deb
 357ea273a099bb8f5c2eabb231f927e50bb9293c7927219e4c5a34a9fb801a47 8219 obitools_1.2.12+dfsg-1_amd64.buildinfo
 e3502553fb23d594cf9a7b69d8195b6086c7355894a849188f38f0e344fbcf49 909078 obitools_1.2.12+dfsg-1_amd64.deb
 00a451086cbba72b932b4711bbca844a 2107 python optional obitools_1.2.12+dfsg-1.dsc
 f67fea98a0510e5fd53b64ec37bae457 241332 python optional obitools_1.2.12+dfsg.orig.tar.xz
 3fdbcc6946bb833e7ffca093e878b282 18316 python optional obitools_1.2.12+dfsg-1.debian.tar.xz
 a1699acf6d8b55a38d68860ecee429cf 2559900 debug optional obitools-dbgsym_1.2.12+dfsg-1_amd64.deb
 8c9591c7a6c947c83a1a37cbd86928c3 8219 python optional obitools_1.2.12+dfsg-1_amd64.buildinfo
 8628456cd3c80ec768e19775f6e653a3 909078 python optional obitools_1.2.12+dfsg-1_amd64.deb



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