Bug#919681: ITP: sourmash -- tools for comparing DNA sequences with MinHash sketches
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>
* Package name : sourmash
Version : 2.0.0~a11
Upstream Author : C. Titus Brown <titus@idyll.org>, Luiz C. Irber, Jr <sourmash@luizirber.org>
* URL : http://sourmash.readthedocs.io/en/latest/
* License : BSD-3-Clause
Programming Lang: Python, C++
Description : tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
.
MinHash sketches provide a lightweight way to store “signatures” of large DNA
or RNA sequence collections, and then compare or search them using a Jaccard
index. MinHash sketches can be used to identify samples, find similar samples,
identify data sets with shared sequences, and build phylogenetic trees
(Ondov et al. 2015).
.
sourmash provides a command line script, a Python library, and a CPython
module for MinHash sketches
Sourmash is team maintained by Debian-Med at https://salsa.debian.org/med-team/sourmash
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