Bug#891971: marked as done (ITP: bali-phy -- Bayesian Inference of Alignment and Phylogeny)
Your message dated Thu, 22 Mar 2018 12:00:10 +0000
with message-id <E1eyyt8-000DeM-Nx@fasolo.debian.org>
and subject line Bug#891971: fixed in bali-phy 3.0.2+dfsg-1
has caused the Debian Bug report #891971,
regarding ITP: bali-phy -- Bayesian Inference of Alignment and Phylogeny
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
891971: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=891971
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Benjamin Redelings <benjamin.redelings@gmail.com>
* Package name : bali-phy
Version : 3.0
Upstream Author : Benjamin Redelings <benjamin.redelings@gmail.com>
* URL : http://www.bali-phy.org/
* License : (GPL)
Programming Lang: (C++)
Description : Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
- Why is this package relevant?
This package performs Bayesian inference of alignment, as well as inference of phylogeny like mrbayes, beast-mcmc, beast2-mcmc, etc. This package produces higher quality alignments than programs like fsa, mafft, muscle, at the cost of taking much longer to run.
- How do you plan to maintain it?
I hope to maintain it myself. I am looking for a mentor.
--- End Message ---
--- Begin Message ---
Source: bali-phy
Source-Version: 3.0.2+dfsg-1
We believe that the bug you reported is fixed in the latest version of
bali-phy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 891971@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Benjamin Redelings <benjamin.redelings@gmail.com> (supplier of updated bali-phy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 11 Mar 2018 07:28:17 +0100
Source: bali-phy
Binary: bali-phy
Architecture: source amd64
Version: 3.0.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Benjamin Redelings <benjamin.redelings@gmail.com>
Description:
bali-phy - Bayesian Inference of Alignment and Phylogeny
Closes: 891971
Changes:
bali-phy (3.0.2+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #891971).
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