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Bug#906332: marked as done (ITP: minimap2 -- versatile pairwise aligner for genomic and spliced nucleotide sequences)

Your message dated Fri, 21 Dec 2018 23:00:10 +0000
with message-id <E1gaTm6-0006uH-QI@fasolo.debian.org>
and subject line Bug#906332: fixed in minimap2 2.14+dfsg-1
has caused the Debian Bug report #906332,
regarding ITP: minimap2 -- versatile pairwise aligner for genomic and spliced nucleotide sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
906332: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906332
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : minimap2
  Version         : 2.12
  Upstream Author : Copyright: © 2017-2018 Broad Institute <hengli@broadinstitute.org>
* URL             : https://github.com/lh3/minimap2
* License         : MIT
  Programming Lang: C
  Description     : versatile pairwise aligner for genomic and spliced nucleotide sequences
 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/minimap2

--- End Message ---
--- Begin Message --- 
Source: minimap2
Source-Version: 2.14+dfsg-1

We believe that the bug you reported is fixed in the latest version of
minimap2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 906332@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated minimap2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 09 Nov 2018 23:36:05 +0100
Source: minimap2
Binary: minimap2
Architecture: source amd64
Version: 2.14+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 minimap2   - versatile pairwise aligner for genomic and spliced nucleotide seq
Closes: 906332
Changes:
 minimap2 (2.14+dfsg-1) unstable; urgency=low
 .
   * Initial packaging (Closes: #906332)
Checksums-Sha1:
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 1bf1c7d78c07a4313efeee8fafcc4438596226ed 337690 minimap2-dbgsym_2.14+dfsg-1_amd64.deb
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Files:
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 12f7c9a273b8f86a9abaa7d780cc07e8 165484 science optional minimap2_2.14+dfsg.orig.tar.xz
 d5d301a506b52bb741217f5b72aa7762 5024 science optional minimap2_2.14+dfsg-1.debian.tar.xz
 7f06762b6d3d201ac026692dec60f511 337690 debug optional minimap2-dbgsym_2.14+dfsg-1_amd64.deb
 2f64371d04ac5b8750d517c750aea637 11853 science optional minimap2_2.14+dfsg-1_amd64.buildinfo
 8e34235f3a219fc0e00d4d6baf25e86d 369952 science optional minimap2_2.14+dfsg-1_amd64.deb

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--- End Message ---
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