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Bug#897614: marked as done (ITP: gkl)

Your message dated Tue, 26 Jun 2018 15:00:10 +0000
with message-id <E1fXpRy-000GGw-6p@fasolo.debian.org>
and subject line Bug#897614: fixed in gkl 0.8.5+dfsg-1
has caused the Debian Bug report #897614,
regarding ITP: gkl
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
897614: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897614
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <osallou@debian.org>
X-CC: debian-med-packaging@lists.alioth.debian.org

* Package name    : gkl
  Version         : 1.0.0
  Upstream Author : Intel corporation
* URL             : Accelerated kernel library for genomics
* License         : MIT
  Programming Lang: Java
  Description     : Accelerated kernel library for genomics

GKL is an optimized versions of compute kernels used in genomics applications like GATK and HTSJDK. These kernels are optimized to run on Intel Architecture (AVX, AVX2, AVX-512, multicore, and FPGA) under 64-bit Linux and Mac OSX.

Kernels included:

PairHMM
AVX and AVX-512 optimized versions of PairHMM used in GATK HaplotypeCaller and MuTect2.
OpenMP support for multicore processors.
FPGA support for Intel PAC and select vendor cards.
Smith-Waterman
AVX2 and AVX-512 optimized versions of Smith-Waterman used in GATK HaplotypeCaller and MuTect2.
DEFLATE Compression/Decompression:
Performance optimized Level 1 and 2 compression and decompression from Intel's ISA-L library.
Performance optimized Level 3 through 9 compression from Intel's Open Source Technology Center zlib library.

--- End Message ---
--- Begin Message --- 
Source: gkl
Source-Version: 0.8.5+dfsg-1

We believe that the bug you reported is fixed in the latest version of
gkl, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 897614@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated gkl package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 03 May 2018 15:06:19 +0000
Source: gkl
Binary: libgkl-java libgkl-jni
Architecture: source all amd64
Version: 0.8.5+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
 libgkl-java - Java library to manipulate SAM and BAM files
 libgkl-jni - native libraries of Java library to manipulate SAM and BAM files
Closes: 897614
Changes:
 gkl (0.8.5+dfsg-1) unstable; urgency=medium
 .
   * New package (Closes: #897614)
Checksums-Sha1:
 bea10e103cec644c2aebf1cc77acd36ad69c6e5f 2186 gkl_0.8.5+dfsg-1.dsc
 358efdf611f574570c14029ef6d669a525474338 1086132 gkl_0.8.5+dfsg.orig.tar.xz
 718e4404e931c505a193e64d1871f98867797798 5832 gkl_0.8.5+dfsg-1.debian.tar.xz
 3a3f3394b1121097327acad5de800d489616b766 16878 gkl_0.8.5+dfsg-1_amd64.buildinfo
 cda8b4d9df00988f61ab3e8763ffffe0495b363f 1143648 libgkl-java_0.8.5+dfsg-1_all.deb
 718ec5a86b221fed48e49305897a295c4540ea12 648234 libgkl-jni-dbgsym_0.8.5+dfsg-1_amd64.deb
 9935d0389630d56a3eadb94f1ec7be66c3d6bd70 189882 libgkl-jni_0.8.5+dfsg-1_amd64.deb
Checksums-Sha256:
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Files:
 ff3c0756fa1e0e9ae52d3420cc48051d 2186 java optional gkl_0.8.5+dfsg-1.dsc
 664b6b28d2a00edc0eef9bda217828e7 1086132 java optional gkl_0.8.5+dfsg.orig.tar.xz
 04e05ee6d3fbd52fb2aa7dd87bd71f3b 5832 java optional gkl_0.8.5+dfsg-1.debian.tar.xz
 b648a8b8573da381d4925b8864a5d9bc 16878 java optional gkl_0.8.5+dfsg-1_amd64.buildinfo
 076f3a5baff43d191ceffb54f8caa3be 1143648 java optional libgkl-java_0.8.5+dfsg-1_all.deb
 22f6a0368854399dedd3f010a3ebd71b 648234 debug optional libgkl-jni-dbgsym_0.8.5+dfsg-1_amd64.deb
 17944a16d12e9f01d1d8bab727e7b293 189882 libs optional libgkl-jni_0.8.5+dfsg-1_amd64.deb

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--- End Message ---
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