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Bug#828176: marked as done (RFP: cnvkit -- Copy number variant detection from targeted DNA sequencing)

Your message dated Tue, 19 Jun 2018 10:00:10 +0000
with message-id <E1fVDQo-000FrC-7S@fasolo.debian.org>
and subject line Bug#828176: fixed in cnvkit 0.9.3-1
has caused the Debian Bug report #828176,
regarding RFP: cnvkit -- Copy number variant detection from targeted DNA sequencing
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
828176: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828176
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>

* Package name    : cnvkit
  Version         : 0.7.11
  Upstream Author : Eric Talevich <eric.talevich@ucsf.edu>
* URL             : http://cnvkit.readthedocs.io/
* License         : Apache-2.0
  Programming Lang: Python
  Description     : Copy number variant detection from targeted DNA sequencing

A command-line toolkit and Python library for detecting copy number variants
and alterations genome-wide from targeted DNA sequencing. It is designed for
use with hybrid capture, including both whole-exome and custom target panels,
and short-read sequencing platforms such as Illumina and Ion Torrent.

Will be team maintained by the Debian Med team

--- End Message ---
--- Begin Message --- 
Source: cnvkit
Source-Version: 0.9.3-1

We believe that the bug you reported is fixed in the latest version of
cnvkit, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 828176@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated cnvkit package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 15 Jun 2018 12:03:11 +0200
Source: cnvkit
Binary: cnvkit
Architecture: source all
Version: 0.9.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 cnvkit     - Copy number variant detection from targeted DNA sequencing
Closes: 828176
Changes:
 cnvkit (0.9.3-1) unstable; urgency=medium
 .
   * New upstream version.
   * Initial release. (Closes: #828176)
   * Policy 4.1.4 compliance
   * Moved to python3
   * Cleaning test tmp results
Checksums-Sha1:
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 ebddf6e6ccd3307a90b1c24e9f9dd73355f4b32f 23651592 cnvkit_0.9.3.orig.tar.gz
 801e99329e7ef70bd5706072453be5de1d4793ce 4540 cnvkit_0.9.3-1.debian.tar.xz
 472b0d950710f90a38b6b033d897b4bb231b00fe 143860 cnvkit_0.9.3-1_all.deb
 5d70fb8f1c93c914ab5e4f401689b4bf3a44f655 9836 cnvkit_0.9.3-1_amd64.buildinfo
Checksums-Sha256:
 9e0e42b066697e916b2f16275b293fbcdd80eb3e2fdf9f17494ed5f89571a54f 2164 cnvkit_0.9.3-1.dsc
 51a7e9c83de481656cc4f33c5d7de230b781106045f3967c2947e9d6fc63b86f 23651592 cnvkit_0.9.3.orig.tar.gz
 a3179ea1a5ed77b03c6e2e3d9c9649330c9ab407e980d6e4fcb4f2777535ca5a 4540 cnvkit_0.9.3-1.debian.tar.xz
 de736f510cb2936d436155fca983ac234884f81ea86274cd1d721f40fe6b09d9 143860 cnvkit_0.9.3-1_all.deb
 781ca2e8822cda8d83a8a0b69eee7506bf7f67b1e3ca5e568573aaf2bec553c7 9836 cnvkit_0.9.3-1_amd64.buildinfo
Files:
 7ae3f1e27949cba21636ff57b0ef203f 2164 science optional cnvkit_0.9.3-1.dsc
 405691a6463582ef3d8b06d274e81c36 23651592 science optional cnvkit_0.9.3.orig.tar.gz
 1adf75a1c3fc21574deb388280b19d7f 4540 science optional cnvkit_0.9.3-1.debian.tar.xz
 182d96ef3606671ea62476222c1e4bce 143860 science optional cnvkit_0.9.3-1_all.deb
 cf1b3a83eda94fbc2b5fb9dd73f86d7a 9836 science optional cnvkit_0.9.3-1_amd64.buildinfo

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--- End Message ---
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