Bug#886463: marked as done (ITP: centrifuge -- rapid and memory-efficient system for classification of DNA sequences)
Your message dated Sun, 11 Feb 2018 22:00:11 +0000
with message-id <E1ekzfP-000DND-Av@fasolo.debian.org>
and subject line Bug#886463: fixed in centrifuge 1.0.3~beta-1
has caused the Debian Bug report #886463,
regarding ITP: centrifuge -- rapid and memory-efficient system for classification of DNA sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
886463: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=886463
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--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: centrifuge -- rapid and memory-efficient system for classification of DNA sequences
- From: Andreas Tille <tille@debian.org>
- Date: Sat, 06 Jan 2018 12:02:36 +0100
- Message-id: <151523655693.17313.11445637657003031523.reportbug@mail.an3as.eu>
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : centrifuge
Version : 1.0.3~beta
Upstream Author : Daehwan Kim, Li Song, Florian P. Breitwieser and Steven L. Salzberg
* URL : https://github.com/infphilo/centrifuge/
* License : GPL
Programming Lang: C++
Description : rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/centrifuge.git
--- End Message ---
--- Begin Message ---
Source: centrifuge
Source-Version: 1.0.3~beta-1
We believe that the bug you reported is fixed in the latest version of
centrifuge, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 886463@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated centrifuge package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 06 Jan 2018 12:11:48 +0100
Source: centrifuge
Binary: centrifuge
Architecture: source amd64
Version: 1.0.3~beta-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
centrifuge - rapid and memory-efficient system for classification of DNA seque
Closes: 886463
Changes:
centrifuge (1.0.3~beta-1) unstable; urgency=low
.
* Initial release (Closes: #886463)
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