[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#855900: marked as done (ITP: paleomix -- pipelines and tools for the processing of ancient and modern HTS data)

Your message dated Thu, 09 Mar 2017 11:00:10 +0000
with message-id <E1clvnm-000IRC-Ic@fasolo.debian.org>
and subject line Bug#855900: fixed in paleomix 1.2.7-1
has caused the Debian Bug report #855900,
regarding ITP: paleomix -- pipelines and tools for the processing of ancient and modern HTS data
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
855900: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855900
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : paleomix
  Version         : 1.2.7
  Upstream Author : Mikkel Schubert
* URL             : https://github.com/MikkelSchubert/paleomix
* License         : MIT
  Programming Lang: Python
  Description     : pipelines and tools for the processing of ancient and modern HTS data
 The PALEOMIX pipelines are a set of pipelines and tools designed to aid
 the rapid processing of High-Throughput Sequencing (HTS) data: The BAM
 pipeline processes de-multiplexed reads from one or more samples,
 through sequence processing and alignment, to generate BAM alignment
 files useful in downstream analyses; the Phylogenetic pipeline carries
 out genotyping and phylogenetic inference on BAM alignment files, either
 produced using the BAM pipeline or generated elsewhere; and the Zonkey
 pipeline carries out a suite of analyses on low coverage equine
 alignments, in order to detect the presence of F1-hybrids in
 archaeological assemblages. In addition, PALEOMIX aids in metagenomic
 analysis of the extracts.
 .
 The pipelines have been designed with ancient DNA (aDNA) in mind, and
 includes several features especially useful for the analyses of ancient
 samples, but can all be for the processing of modern samples, in order
 to ensure consistent data processing.


Remark: This package will be maintained by the Debian Med team at
   https://anonscm.debian.org/git/debian-med/paleomix.git

--- End Message ---
--- Begin Message --- 
Source: paleomix
Source-Version: 1.2.7-1

We believe that the bug you reported is fixed in the latest version of
paleomix, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 855900@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated paleomix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 23 Feb 2017 11:39:23 +0100
Source: paleomix
Binary: paleomix
Architecture: source all
Version: 1.2.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 paleomix   - pipelines and tools for the processing of ancient and modern HTS
Closes: 855900
Changes:
 paleomix (1.2.7-1) unstable; urgency=medium
 .
   * Initial release (Closes: #855900)
Checksums-Sha1:
 84070f21c30b354b111ae1a3bd489570ce9e309b 2111 paleomix_1.2.7-1.dsc
 a62f8e9ed1e81630c692e235a605fd7eab4c4694 5139839 paleomix_1.2.7.orig.tar.gz
 712c128ef5aba41ae3e2334dc28b61e2b08ad1f0 10908 paleomix_1.2.7-1.debian.tar.xz
 3144f79ce311780c5b1d3a21ae9b7ad93b540c7f 4679844 paleomix_1.2.7-1_all.deb
 c8e63dec70d7d6e04125f4dc0f3408fc0386caff 7079 paleomix_1.2.7-1_amd64.buildinfo
Checksums-Sha256:
 dd6a831f9f3aae5feca36d5f876909a2794969f68ad457ec959c3d228f27cb13 2111 paleomix_1.2.7-1.dsc
 5c651b7ae15d41f2a1c67e6ff272b45cacea32699a3f4b90db6afc2479a8c677 5139839 paleomix_1.2.7.orig.tar.gz
 ffd97dd462eb3504ef79db637cb29b1fbc44d059bfaf993ef4946c7b43999eaa 10908 paleomix_1.2.7-1.debian.tar.xz
 9ef16db34ee70c6284f43f480d4eafbf0585dd5518a1356d700d0cc626a8d921 4679844 paleomix_1.2.7-1_all.deb
 1f258ee340100b70b833e71c58a33abd1f352a2aa5d639e6fa287cd20f274729 7079 paleomix_1.2.7-1_amd64.buildinfo
Files:
 c82b838cf47d0999df3460349d3fc76a 2111 science optional paleomix_1.2.7-1.dsc
 d69dd8fd8cb34126a57591a17710dc7e 5139839 science optional paleomix_1.2.7.orig.tar.gz
 2bbc49ce03ef59bdbd0907bd262184f8 10908 science optional paleomix_1.2.7-1.debian.tar.xz
 0609c485f7c1004ff080c4dc142df043 4679844 science optional paleomix_1.2.7-1_all.deb
 23fb5327174825cbe9f3d716260c4d98 7079 science optional paleomix_1.2.7-1_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
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=NwL/
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: