Bug#856661: marked as done (ITP: transit -- statistical calculations of essentiality of genes or genomic regions)
Your message dated Sat, 04 Mar 2017 11:00:13 +0000
with message-id <E1ck7Q5-0002bR-PW@fasolo.debian.org>
and subject line Bug#856661: fixed in tnseq-transit 2.0.2-1
has caused the Debian Bug report #856661,
regarding ITP: transit -- statistical calculations of essentiality of genes or genomic regions
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
856661: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=856661
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : transit
Version : 2.0.2
Upstream Author : Michael A. DeJesus, Chaitra Ambadipudi, and Thomas R. Ioerger
* URL : http://pythonhosted.org/tnseq-transit/transit_overview.html
* License : GPL
Programming Lang: Python
Description : statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/cgit/debian-med/transit.git
--- End Message ---
--- Begin Message ---
Source: tnseq-transit
Source-Version: 2.0.2-1
We believe that the bug you reported is fixed in the latest version of
tnseq-transit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 856661@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated tnseq-transit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 03 Mar 2017 16:06:48 +0100
Source: tnseq-transit
Binary: tnseq-transit
Architecture: source amd64
Version: 2.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Closes: 856661
Changes:
tnseq-transit (2.0.2-1) unstable; urgency=medium
.
* Initial release (Closes: #856661)
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