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Bug#869969: marked as done (ITP: gfapy -- flexible and extensible software library for handling sequence graphs)

Your message dated Thu, 31 Aug 2017 09:00:15 +0000
with message-id <E1dnLKh-0007hs-MK@fasolo.debian.org>
and subject line Bug#869969: fixed in gfapy 1.0.0+dfsg-1
has caused the Debian Bug report #869969,
regarding ITP: gfapy -- flexible and extensible software library for handling sequence graphs
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
869969: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=869969
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta@debian.org>

* Package name    : gfapy
  Version         : 1.0.0
  Upstream Author : Giorgio Gonnella
* URL             : https://github.com/ggonnella/gfapy
* License         : ISC
  Programming Lang: Python
  Description     : flexible and extensible software library for handling sequence graphs

The Graphical Fragment Assembly (GFA) are formats for the representation of
sequence graphs, including assembly, variation and splicing graphs. Two
versions of GFA have been defined (GFA1 and GFA2) and several sequence
analysis programs have been adopting the formats as an interchange format,
which allow the user to easily combine different sequence analysis tools.

This library implements the GFA1 and GFA2 specification. It is possible to
create a Gfa object from a file in the GFA format or from scratch, to
enumerate the graph elements (segments, links, containments, paths and header
lines), to traverse the graph (by traversing all links outgoing from or
incoming to a segment), to search for elements (e.g. which links connect two
segments) and to manipulate the graph (e.g. to eliminate a link or a segment
or to duplicate a segment distributing the read counts evenly on the copies).

The GFA format can be easily extended by users by defining own custom tags
and record types. In Gfapy, it is easy to write extensions modules, which
allow one to define custom record types and datatypes for the parsing and
validation of custom fields. The custom lines can be connected, using
references, to each other and to lines of the standard record types.

--- End Message ---
--- Begin Message --- 
Source: gfapy
Source-Version: 1.0.0+dfsg-1

We believe that the bug you reported is fixed in the latest version of
gfapy, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 869969@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sascha Steinbiss <satta@debian.org> (supplier of updated gfapy package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 28 Jul 2017 11:35:53 +0200
Source: gfapy
Binary: python3-gfapy
Architecture: source amd64
Version: 1.0.0+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
 python3-gfapy - flexible and extensible software library for handling sequence gr
Closes: 869969
Changes:
 gfapy (1.0.0+dfsg-1) unstable; urgency=low
 .
   * Initial packaging (Closes: #869969)
Checksums-Sha1:
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 78a7f5218a1ef2696fbff266aa351b7c1d6f3cab 3532 gfapy_1.0.0+dfsg-1.debian.tar.xz
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Checksums-Sha256:
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 ff87527681161ce5bf9c6787bf570094397cbcfa59777a48a0a8b8753ecd06ab 3532 gfapy_1.0.0+dfsg-1.debian.tar.xz
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Files:
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 bb3aeee7abf3094569e089c720f98d10 130268 science optional gfapy_1.0.0+dfsg.orig.tar.xz
 ac57f8165abc5661960d3171e66bee8e 3532 science optional gfapy_1.0.0+dfsg-1.debian.tar.xz
 775bb7a516d8e08b55882697da1e7faf 5637 science optional gfapy_1.0.0+dfsg-1_amd64.buildinfo
 8e614262e023ecab3151443651831682 74308 science optional python3-gfapy_1.0.0+dfsg-1_amd64.deb

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--- End Message ---
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