Bug#859506: marked as done (ITP: seqsero -- Salmonella serotyping from genome sequencing data)
Your message dated Tue, 04 Apr 2017 21:00:12 +0000
with message-id <E1cvVYi-0005Hn-Q0@fasolo.debian.org>
and subject line Bug#859506: fixed in seqsero 1.0-1
has caused the Debian Bug report #859506,
regarding ITP: seqsero -- Salmonella serotyping from genome sequencing data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
859506: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859506
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : seqsero
Version : 1.0
Upstream Author : Shaokang Zhang (zskzsk@uga.edu) and Xiangyu Deng (xdeng@uga.edu)
* URL : https://github.com/denglab/SeqSero
* License : GPL
Programming Lang: Python
Description : Salmonella serotyping from genome sequencing data
SeqSero is a pipeline for Salmonella serotype determination from raw
sequencing reads or genome assemblies.
.
SeqSero is a novel tool for determining Salmonella serotypes using high-
throughput genome sequencing data. SeqSero is based on curated databases
of Salmonella serotype determinants (rfb gene cluster, fliC and fljB
alleles) and is predicted to determine serotype rapidly and accurately
for nearly the full spectrum of Salmonella serotypes (more than 2,300
serotypes), from both raw sequencing reads and genome assemblies. The
performance of SeqSero was evaluated by testing
1. raw reads from genomes of 308 Salmonella isolates of known serotype
2. raw reads from genomes of 3,306 Salmonella isolates sequenced and
made publicly available by GenomeTrakr, a U.S. national monitoring
network operated by the Food and Drug Administration; and
3. 354 other publicly available draft or complete Salmonella genomes.
SeqSero can help to maintain the well-established utility of Salmonella
serotyping when integrated into a platform of WGS-based pathogen
subtyping and characterization.
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/seqsero.git
--- End Message ---
--- Begin Message ---
Source: seqsero
Source-Version: 1.0-1
We believe that the bug you reported is fixed in the latest version of
seqsero, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 859506@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated seqsero package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 04 Apr 2017 16:00:13 +0200
Source: seqsero
Binary: seqsero
Architecture: source all
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
seqsero - Salmonella serotyping from genome sequencing data
Closes: 859506
Changes:
seqsero (1.0-1) unstable; urgency=medium
.
* Initial release (Closes: #859506)
Checksums-Sha1:
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Files:
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