Bug#836956: marked as done (ITP: metaphlan2-data -- data package for Metagenomic Phylogenetic Analysis)
Your message dated Tue, 27 Sep 2016 12:01:56 +0000
with message-id <E1bor5A-0006OM-Mn@franck.debian.org>
and subject line Bug#836956: fixed in metaphlan2-data 2.6.0+ds-1
has caused the Debian Bug report #836956,
regarding ITP: metaphlan2-data -- data package for Metagenomic Phylogenetic Analysis
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
836956: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836956
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : metaphlan2-data
Version : 2.6.0
Upstream Author : Duy Tin Truong, Nicola Segata and Curtis Huttenhower
* URL : https://bitbucket.org/biobakery/metaphlan2/downloads
* License : expat
Programming Lang: none (pure data)
Description : data package for Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from
metagenomic shotgun sequencing data with species level resolution. From
version 2.0, MetaPhlAn is also able to identify specific strains (in the
not-so-frequent cases in which the sample contains a previously
sequenced strains) and to track strains across samples for all species.
.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
marker information file can be found at src/utils/markers_info.txt.bz2
or here) identified from ~17,000 reference genomes (~13,500 bacterial
and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
.
This package contains the data for metaphlan2.
Remark: As discussed on debian-devel list[1] the large data are split
from metaphlan2 download into this package and also converted to some
format which is smaller in size as well as human editable. The package
contains a script which converts these data back to the original format
(and does a md5sum based check whether the conversion was successful).
The package is maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/metaphlan2-data.git
[1] last mail in thread which is implemented finally
https://lists.debian.org/debian-devel/2016/08/msg00066.html
--- End Message ---
--- Begin Message ---
Source: metaphlan2-data
Source-Version: 2.6.0+ds-1
We believe that the bug you reported is fixed in the latest version of
metaphlan2-data, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 836956@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated metaphlan2-data package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 07 Sep 2016 17:17:24 +0200
Source: metaphlan2-data
Binary: metaphlan2-data
Architecture: source all
Version: 2.6.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
metaphlan2-data - data package for Metagenomic Phylogenetic Analysis
Closes: 836956
Changes:
metaphlan2-data (2.6.0+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #836956)
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