Bug#835935: marked as done (ITP: pirs -- Profile based Illumina pair-end Reads Simulator)
Your message dated Mon, 28 Nov 2016 11:00:14 +0000
with message-id <E1cBJfS-000Bkc-NI@fasolo.debian.org>
and subject line Bug#835935: fixed in pirs 2.0.2+dfsg-1
has caused the Debian Bug report #835935,
regarding ITP: pirs -- Profile based Illumina pair-end Reads Simulator
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
835935: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835935
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: pirs -- Profile based Illumina pair-end Reads Simulator
- From: Andreas Tille <tille@debian.org>
- Date: Mon, 29 Aug 2016 15:26:55 +0200
- Message-id: <20160829132655.10199.35689.reportbug@mail.an3as.eu>
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : pirs
Version : 2.0.2
Upstream Author : BGI
* URL : https://github.com/galaxy001/pirs
* License : BSD
Programming Lang: C++
Description : Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a
series of characters generated by Illumina sequencing platform, such as
insert size distribution, sequencing error(substitution, insertion,
deletion), quality score and GC content-coverage bias.
.
The insert size follows a normal distribution, so users should set the
mean value and standard deviation. Usually the standard deviation is set
as 1/20 of the mean value. The normal distribution by Box-Muller method
is simulated.
.
The program simulates sequencing error, quality score and GC content-
coverage bias according to the empirical distribution profile. Some
default profiles counted from lots of real sequencing data are provided.
.
To simulate reads from diploid genome, users should simulate the diploid
genome sequence firstly by setting the ratio of heterozygosis SNP,
heterozygosis InDel and structure variation.
--- End Message ---
--- Begin Message ---
Source: pirs
Source-Version: 2.0.2+dfsg-1
We believe that the bug you reported is fixed in the latest version of
pirs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 835935@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated pirs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 29 Aug 2016 15:39:51 +0200
Source: pirs
Binary: pirs pirs-profiles pirs-examples
Architecture: source amd64 all
Version: 2.0.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
pirs - Profile based Illumina pair-end Reads Simulator
pirs-examples - profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles - profile basd Illumina pair-end Reads Simulator (profile data)
Closes: 835935
Changes:
pirs (2.0.2+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #835935)
Checksums-Sha1:
11656a8d3c6a4a8d2d43260ce7a00a428e323fe7 2148 pirs_2.0.2+dfsg-1.dsc
f7ad7b1afb04ddb941cf2aa00a368ee61883fcdd 6029204 pirs_2.0.2+dfsg.orig.tar.xz
d616d1d551c8a4f6c8f6f0fadf9c1a2baf14971c 4940 pirs_2.0.2+dfsg-1.debian.tar.xz
2fc40c527466082f60f1eaf97194742e7a628ed8 321176 pirs-dbgsym_2.0.2+dfsg-1_amd64.deb
c1b9a4c208ef3948b5571d36f51676ae4e4bb59f 1947724 pirs-examples_2.0.2+dfsg-1_all.deb
c2145fe992793bab1d0721e0aadac4b4a0e62ea1 2565300 pirs-profiles_2.0.2+dfsg-1_all.deb
beb3429d2d57eaedc22a4d9f0283ad114a4bdf4a 5821 pirs_2.0.2+dfsg-1_amd64.buildinfo
edfdf5d71b444149734e1a1be64da591f3a35f8a 112770 pirs_2.0.2+dfsg-1_amd64.deb
Checksums-Sha256:
9cde803608b0bffcdaad54368469facfbb9b2fabc4726148c856eeb31f2b6a63 2148 pirs_2.0.2+dfsg-1.dsc
ef7ed1400dafd06f29a699023f0ecdcd52e0073254c87646c4ecea803e4b1d93 6029204 pirs_2.0.2+dfsg.orig.tar.xz
77a313502383038776b497357aedaab4e7b88ba1a6ad46dbd1f87da9f14cec33 4940 pirs_2.0.2+dfsg-1.debian.tar.xz
2a31c4ab2556e4271f54ae746539903428ecf75835c7596eba99e981425332d6 321176 pirs-dbgsym_2.0.2+dfsg-1_amd64.deb
414ea7513a066ef0ba28239b53f7edac8d937d00038e2cc846e94b4d7baf333a 1947724 pirs-examples_2.0.2+dfsg-1_all.deb
c0302e35e62a048049921f69a41937cc79d77249830549bc691e551c8a41943e 2565300 pirs-profiles_2.0.2+dfsg-1_all.deb
13a0a0847fef552bc361b7cf35d233ff7c98ed349a58c7119dd6d4bda55c3fe7 5821 pirs_2.0.2+dfsg-1_amd64.buildinfo
ca675acb59d50d08d4e4668afca0c29f435ab68d1dbaeea60f3850bdc6514636 112770 pirs_2.0.2+dfsg-1_amd64.deb
Files:
46321d593ab4c6caa209e36a320a557e 2148 science optional pirs_2.0.2+dfsg-1.dsc
1ee1373ad8b358f61adc8429645f946d 6029204 science optional pirs_2.0.2+dfsg.orig.tar.xz
606011a82474e6d6d40448e0f2ee5dc6 4940 science optional pirs_2.0.2+dfsg-1.debian.tar.xz
ad726661d090843568db84c7fa07dc30 321176 debug extra pirs-dbgsym_2.0.2+dfsg-1_amd64.deb
4af3ecf7fa8db2f55213013dd9b5e0bf 1947724 science optional pirs-examples_2.0.2+dfsg-1_all.deb
1cfa2b021a8d17cbc7ab53b8dfbbeeae 2565300 science optional pirs-profiles_2.0.2+dfsg-1_all.deb
4835c813d1b659e4098f225d9ffb72bd 5821 science optional pirs_2.0.2+dfsg-1_amd64.buildinfo
f3d9f94fc10ac3f302585548fe91a7db 112770 science optional pirs_2.0.2+dfsg-1_amd64.deb
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