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Bug#839915: marked as done (ITP: crac -- integrated RNA-Seq read analysis)

Your message dated Wed, 09 Nov 2016 12:00:11 +0000
with message-id <E1c4RY3-000Ftb-8f@fasolo.debian.org>
and subject line Bug#839915: fixed in crac 2.5.0+dfsg-1
has caused the Debian Bug report #839915,
regarding ITP: crac -- integrated RNA-Seq read analysis
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
839915: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=839915
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : crac
  Version         : 2.5.0
  Upstream Author : Nicolas PHILIPPE, Mikaël SALSON, a.o.
* URL             : http://crac.gforge.inria.fr
* License         : CeCILL
  Programming Lang: C++
  Description     : integrated RNA-Seq read analysis
 CRAC is a tool to analyze High Throughput Sequencing (HTS) data in
 comparison to a reference genome. It is intended for transcriptomic
 and genomic sequencing reads. More precisely, with transcriptomic
 reads as input, it predicts point mutations, indels, splice junction,
 and chimeric RNAs (ie, non colinear splice junctions). CRAC can also
 output positions and nature of sequence error that it detects in the
 reads. CRAC uses a genome index. This index must be computed before
 running the read analysis. For this sake, use the command "crac-index"
 on your genome files. You can then process the reads using the command
 crac. See the man page of CRAC (help file) by typing "man crac". CRAC
 requires large amount of main memory on your computer. For processing
 against the Human genome, say 50 million reads of 100 nucleotide each,
 CRAC requires about 40 gigabytes of main memory. Check whether the
 system of your computing server is equipped with sufficient amount of
 memory before launching an analysis.


Remark: This package is maintained by the Debian Med team at
   https://anonscm.debian.org/git/debian-med/crac.git

--- End Message ---
--- Begin Message --- 
Source: crac
Source-Version: 2.5.0+dfsg-1

We believe that the bug you reported is fixed in the latest version of
crac, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 839915@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated crac package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 06 Oct 2016 13:01:17 +0200
Source: crac
Binary: crac
Architecture: source amd64
Version: 2.5.0+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 crac       - integrated RNA-Seq read analysis
Closes: 839915
Changes:
 crac (2.5.0+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #839915)
Checksums-Sha1:
 55365c50a4b55f83dfb12b665ee75e0109130f83 2006 crac_2.5.0+dfsg-1.dsc
 66939440dd02da5a2cdef9b06c0119f4147c7269 464840 crac_2.5.0+dfsg.orig.tar.xz
 d62aed5831351ea377ba53b155872c8154c336fd 11720 crac_2.5.0+dfsg-1.debian.tar.xz
 1cb20283a14543af6bd43d3a0537b7cb80d0c648 1578442 crac-dbgsym_2.5.0+dfsg-1_amd64.deb
 8c31fd5a6a67156639b68b3c2609c5dba51f550f 5662 crac_2.5.0+dfsg-1_20161109T080456z-8f7251cc.buildinfo
 05eddd18b432e6e9dfcfc2640b409dec2e4499b7 254322 crac_2.5.0+dfsg-1_amd64.deb
Checksums-Sha256:
 24dd7183267603b8d0080b423cbf545668e5531782eb4bf7f51c444c990578e9 2006 crac_2.5.0+dfsg-1.dsc
 14ff88bcc3659b10a60737480a2387d9d72cdfe5841cafb430b4db9ab3770324 464840 crac_2.5.0+dfsg.orig.tar.xz
 94d611dff2b40c904c9f7f3eb68ca4fb51d992f5a0c23939f580d300bf415fbf 11720 crac_2.5.0+dfsg-1.debian.tar.xz
 fe52442012908c839f5f6bb379a749b9409b6d280738f505a26bcb65a1908c71 1578442 crac-dbgsym_2.5.0+dfsg-1_amd64.deb
 3a31af282415f27f00b81320e89d2e98dec90c90826013fa1f697552c3bb8add 5662 crac_2.5.0+dfsg-1_20161109T080456z-8f7251cc.buildinfo
 e967debb3b58d495523d9b0db095a7a22b971ff1dada2837e3dacbf1bd438b32 254322 crac_2.5.0+dfsg-1_amd64.deb
Files:
 484df097f47f2b2f12401759a21af089 2006 science optional crac_2.5.0+dfsg-1.dsc
 887c9cd0d38431274a25a57678205193 464840 science optional crac_2.5.0+dfsg.orig.tar.xz
 377aab0591f3e818c77570f8802fa33f 11720 science optional crac_2.5.0+dfsg-1.debian.tar.xz
 40ab15588d07494ad51d67dce9eeb4bc 1578442 debug extra crac-dbgsym_2.5.0+dfsg-1_amd64.deb
 8f7251cc7437d3d4d62e58d2d9cbd3e4 5662 science optional crac_2.5.0+dfsg-1_20161109T080456z-8f7251cc.buildinfo
 f46d31af8c7171196c9b12680b5bbdac 254322 science optional crac_2.5.0+dfsg-1_amd64.deb

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