Bug#838083: marked as done (ITP: metaphlan2 -- Metagenomic Phylogenetic Analysis)
Your message dated Tue, 27 Sep 2016 12:00:29 +0000
with message-id <E1bor3l-0006LB-BO@franck.debian.org>
and subject line Bug#838083: fixed in metaphlan2 2.6.0+ds-1
has caused the Debian Bug report #838083,
regarding ITP: metaphlan2 -- Metagenomic Phylogenetic Analysis
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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838083: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838083
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : metaphlan2
Version : 2.6.0
Upstream Author : Duy Tin Truong, Nicola Segata and Curtis Huttenhower
* URL : https://bitbucket.org/biobakery/metaphlan2
* License : MIT
Programming Lang: Python
Description : Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from
metagenomic shotgun sequencing data with species level resolution. From
version 2.0, MetaPhlAn is also able to identify specific strains (in the
not-so-frequent cases in which the sample contains a previously
sequenced strains) and to track strains across samples for all species.
.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
marker information file can be found at src/utils/markers_info.txt.bz2
or here) identified from ~17,000 reference genomes (~13,500 bacterial
and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
Remark: The large dataset that is contained in the download archive was
split up into a separate package metaphlan2-data since it is shipped in
a better compressible format and also will not change that frequently as
the code. The package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/metaphlan2.git
--- End Message ---
--- Begin Message ---
Source: metaphlan2
Source-Version: 2.6.0+ds-1
We believe that the bug you reported is fixed in the latest version of
metaphlan2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 838083@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated metaphlan2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 17 Sep 2016 12:26:03 +0200
Source: metaphlan2
Binary: metaphlan2
Architecture: source all
Version: 2.6.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
metaphlan2 - Metagenomic Phylogenetic Analysis
Closes: 838083
Changes:
metaphlan2 (2.6.0+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #838083)
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--- End Message ---
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