Bug#838070: ITP: eagle -- Haplotype phasing within a genotyped cohort or using a phased reference panel
Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi <bob.dybian@gmail.com>
Package name: bio-eagle
URL: https://data.broadinstitute.org/alkesgroup/Eagle/
License: GPL3+
Description: Haplotype phasing within a genotyped cohort or using a
phased reference panel
Eagle estimates haplotype phase either within a genotyped cohort or using a
phased reference panel. The basic idea of the Eagle1 algorithm is to harness
identity-by-descent among distant relatives—which is pervasive at very large
sample sizes but rare among smaller numbers of samples—to rapidly call phase
using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a
full probabilistic model similar to the diploid Li-Stephens model used by
previous HMM-based methods.
This package will be maintained by the Debian Med team at:
https://anonscm.debian.org/git/debian-med/eagle.git
Dylan
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