Bug#834208: marked as done (ITP: physamp -- sample sequence alignment according to its corresponding phylogenetic tree)
Your message dated Tue, 16 Aug 2016 14:00:15 +0000
with message-id <E1bZeud-0000mF-NS@franck.debian.org>
and subject line Bug#834208: fixed in physamp 0.2.0-1
has caused the Debian Bug report #834208,
regarding ITP: physamp -- sample sequence alignment according to its corresponding phylogenetic tree
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
834208: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834208
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : physamp
Version : 0.2.0
Upstream Author : Julien Dutheil <julien.dutheil@univ-montp2.fr>
* URL : http://biopp.univ-montp2.fr/repos/sources/physamp
* License : GPL
Programming Lang: C++
Description : sample sequence alignment according to its corresponding phylogenetic tree
The PhySamp package currently contains one program, bppalnoptim, which
samples a sequence alignment by removing sequences in order to maximize
the number of sites suitable for a given analysis. The program has three
running modes:
* Interactive: the user will be iteratively proposed a set of choices
for sequence removal, with their corresponding site gains. The
procedure stops when the user does not want to remove more sequences,
and the resulting filtered alignment is written.
* Automatic: the user enters an a priori criterion for stopping
the filtering procedure (for instance a minimum number of
sequences to keep).
* Diagnostic: this mode allows one to plot the trade-off curve, by showing
the site gain as a function of the number of removed sequences.
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/physamp.git
--- End Message ---
--- Begin Message ---
Source: physamp
Source-Version: 0.2.0-1
We believe that the bug you reported is fixed in the latest version of
physamp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 834208@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated physamp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 13 Aug 2016 08:24:09 +0200
Source: physamp
Binary: physamp
Architecture: source amd64
Version: 0.2.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
physamp - sample sequence alignment according to its corresponding phylogen
Closes: 834208
Changes:
physamp (0.2.0-1) unstable; urgency=medium
.
* Initial release (Closes: #834208)
Checksums-Sha1:
47f415c6cb58e7444f3f30ef06b140d7d9ec1025 1974 physamp_0.2.0-1.dsc
28a1b602d82790e5974816c7e30b01e448e07a52 189236 physamp_0.2.0.orig.tar.gz
a9998c3e929d406935fd214894d7feb63b59813a 2268 physamp_0.2.0-1.debian.tar.xz
b85dfb412983ca153951e8b2ee68a95fe11403d8 22666 physamp-dbgsym_0.2.0-1_amd64.deb
97ac2ab27c3d2d5dd3228db5c742477d84aa3644 233052 physamp_0.2.0-1_amd64.deb
Checksums-Sha256:
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1ed83720673d2bcd2cbe3c77ae0d588612a41e640765fcb1a2f4530e2bd9eeff 189236 physamp_0.2.0.orig.tar.gz
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Files:
c664cdc5c8ac1f01bcb12e354e886608 1974 science optional physamp_0.2.0-1.dsc
35c2d4bc4f5214e51d0305882e1115e8 189236 science optional physamp_0.2.0.orig.tar.gz
9015e9583e2dbb073a78889d4f6d6316 2268 science optional physamp_0.2.0-1.debian.tar.xz
3e4ca48b75864a6d1be790f19f6a80e7 22666 debug extra physamp-dbgsym_0.2.0-1_amd64.deb
f3052c881492c835ee8dc47fce26eaf1 233052 science optional physamp_0.2.0-1_amd64.deb
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--- End Message ---
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