Bug#828042: marked as done (ITP: libssw -- fast SIMD parallelized implementation of the Smith-Waterman algorithm)
Your message dated Sat, 25 Jun 2016 13:00:40 +0000
with message-id <E1bGnCS-0002K9-6c@franck.debian.org>
and subject line Bug#828042: fixed in libssw 1.0-1
has caused the Debian Bug report #828042,
regarding ITP: libssw -- fast SIMD parallelized implementation of the Smith-Waterman algorithm
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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828042: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828042
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta@debian.org>
* Package name : libssw
Version : git20160511.7d84de2
Upstream Author : Mengyao Zhao <zhaomengyao@gmail.com>
* URL : https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
* License : MIT
Programming Lang: C
Description : fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. The SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
The current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.
This package will be maintained by the Debian Med Packaging Team as a
dependency for SPAdes, to replace code currently embedded there.
--- End Message ---
--- Begin Message ---
Source: libssw
Source-Version: 1.0-1
We believe that the bug you reported is fixed in the latest version of
libssw, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 828042@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <satta@debian.org> (supplier of updated libssw package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 24 Jun 2016 13:45:35 +0000
Source: libssw
Binary: libssw0 libssw-dev libssw-java ssw-align
Architecture: source amd64
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
libssw-dev - Development headers and static libraries for libssw
libssw-java - Java bindings for libssw
libssw0 - fast SIMD parallelized implementation of the Smith-Waterman algor
ssw-align - Smith-Waterman aligner based on libssw
Closes: 828042
Changes:
libssw (1.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828042)
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--- End Message ---
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