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Bug#822776: marked as done (ITP: maffilter -- process genome alignment in the Multiple Alignment Format)

Your message dated Sun, 15 May 2016 18:00:23 +0000
with message-id <E1b20L1-0001le-9r@franck.debian.org>
and subject line Bug#822776: fixed in maffilter 1.1.0-1+dfsg-1
has caused the Debian Bug report #822776,
regarding ITP: maffilter -- process genome alignment in the Multiple Alignment Format
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
822776: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822776
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : maffilter
  Version         : 1.1.0
  Upstream Author : Julien Dutheil <julien.dutheil@univ-montp2.fr>
* URL             : http://biopp.univ-montp2.fr/repos/sources/maffilter/
* License         : CeCILL
  Programming Lang: C++
  Description     : process genome alignment in the Multiple Alignment Format
 MafFilter applies a series of "filters" to a MAF file, in order to
 clean it, extract data and computer statistics while keeping track of
 the associated meta-data such as genome coordinates and quality scores.
 .
  * It can process the alignment to remove low-quality / ambiguous /
    masked regions.
  * It can export data into a single or multiple alignment file in
    format such as Fasta or Clustal.
  * It can read annotation data in GFF or GTF format, and extract the
    corresponding alignment.
  * It can perform sliding windows calculations.
  * It can reconstruct phylogeny/genealogy along the genome alignment.
  * It can compute population genetics statistics, such as site
    frequency spectrum, number of fixed/polymorphic sites, etc.


This package will be maintained by the Debian Med team at
    https://anonscm.debian.org/git/debian-med/maffilter.git

--- End Message ---
--- Begin Message --- 
Source: maffilter
Source-Version: 1.1.0-1+dfsg-1

We believe that the bug you reported is fixed in the latest version of
maffilter, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 822776@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated maffilter package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 27 Apr 2016 15:59:57 +0200
Source: maffilter
Binary: maffilter maffilter-examples
Architecture: source all amd64
Version: 1.1.0-1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 maffilter  - process genome alignment in the Multiple Alignment Format
 maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl
Closes: 822776
Changes:
 maffilter (1.1.0-1+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #822776)
Checksums-Sha1:
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 f1cd91577bcbc3d3b18b76a8c1a29ed6b3ee73c5 5606660 maffilter_1.1.0-1+dfsg.orig.tar.xz
 9dbd76e8756a4de1eb1dec38d59a891d5c193c05 3140 maffilter_1.1.0-1+dfsg-1.debian.tar.xz
 16d7da81370880e7346d05c16a13559ae99e7297 6177528 maffilter-examples_1.1.0-1+dfsg-1_all.deb
 47fbdd7c70fdf22d2cb3fe21b06b48c87c44361d 3494 maffilter_1.1.0-1+dfsg-1_amd64.deb
Checksums-Sha256:
 28cf3faf6eba9b158389b992256b7f1c53bdd8c1feec8a7d70672bc2f7e106b4 2215 maffilter_1.1.0-1+dfsg-1.dsc
 18fe9fb7567bd9645b9797fb7f47259386691c973c1b1ebbda66f4a8834635c1 5606660 maffilter_1.1.0-1+dfsg.orig.tar.xz
 272a7757d8a567aea656d7f5b3fbeecb50fb98a5b832e9ad03ba6cb371460983 3140 maffilter_1.1.0-1+dfsg-1.debian.tar.xz
 3edbd9d839e94fd176dc3e04f9384c9f5a3b4b52fe989a54624ca823bd6df549 6177528 maffilter-examples_1.1.0-1+dfsg-1_all.deb
 e135f3fbd3a7774ca77800ce919ba67d2b9791b17ff50271b5c9041a2ec99c64 3494 maffilter_1.1.0-1+dfsg-1_amd64.deb
Files:
 f2cf53950580c17b266549b61c73fc49 2215 science optional maffilter_1.1.0-1+dfsg-1.dsc
 261e0764b10f7314eb565f4673da3489 5606660 science optional maffilter_1.1.0-1+dfsg.orig.tar.xz
 b7d8130464ae3015f40e9683ac18b509 3140 science optional maffilter_1.1.0-1+dfsg-1.debian.tar.xz
 007b74f14f9aed17fe5ded775600e58b 6177528 science optional maffilter-examples_1.1.0-1+dfsg-1_all.deb
 f1ed362a57c8f44f1ac946682f4a9fa7 3494 science optional maffilter_1.1.0-1+dfsg-1_amd64.deb

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