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Bug#819355: marked as done (ITP: augustus -- gene prediction in eukaryotic genomes)

Your message dated Thu, 14 Apr 2016 09:00:54 +0000
with message-id <E1aqd8w-0003Yg-LG@franck.debian.org>
and subject line Bug#819355: fixed in augustus 3.2.2+dfsg-1
has caused the Debian Bug report #819355,
regarding ITP: augustus -- gene prediction in eukaryotic genomes
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
819355: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=819355
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sascha@steinbiss.name>

* Package name    : augustus
  Version         : 3.2.1
  Upstream Author : Lizzy Gerischer, Oliver Keller, Stefanie König, Lars Romoth, Mario Stanke <mario.stanke@uni-greifswald.de>
* URL             : http://bioinf.uni-greifswald.de/augustus/ 
* License         : Artistic
  Programming Lang: C++
  Description     : gene prediction in eukaryotic genomes

AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model, which is a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.

This package will be maintained under the umbrella of the Debian Med
Packaging Team.

--- End Message ---
--- Begin Message --- 
Source: augustus
Source-Version: 3.2.2+dfsg-1

We believe that the bug you reported is fixed in the latest version of
augustus, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 819355@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sascha Steinbiss <sascha@steinbiss.name> (supplier of updated augustus package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 02 Apr 2016 20:13:40 +0000
Source: augustus
Binary: augustus augustus-data augustus-doc
Architecture: source all amd64
Version: 3.2.2+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sascha@steinbiss.name>
Description:
 augustus   - gene prediction in eukaryotic genomes
 augustus-data - data files for AUGUSTUS
 augustus-doc - documentation files for AUGUSTUS
Closes: 819355
Changes:
 augustus (3.2.2+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #819355)
Checksums-Sha1:
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 2835503cdc509ad48c8798adf53d2d0fc761cf57 44912880 augustus_3.2.2+dfsg.orig.tar.xz
 e971881ce35e2bd6961fc8441c1db704cb54637d 17280 augustus_3.2.2+dfsg-1.debian.tar.xz
 8f69bd24e534e649908fed5ad187ea66789dcbc3 14792524 augustus-data_3.2.2+dfsg-1_all.deb
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 3944e5e8ec8d464c59fc35decceae856335bbea3 1118628 augustus_3.2.2+dfsg-1_amd64.deb
Checksums-Sha256:
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 be1104e858256f9feac53b39256efbb0bea923d58369d1a97464b276a806ad2e 1118628 augustus_3.2.2+dfsg-1_amd64.deb
Files:
 6871b05dce9103ecc8cae7b44b389923 2264 science optional augustus_3.2.2+dfsg-1.dsc
 d109008350e9baa609a827eb4d2051cc 44912880 science optional augustus_3.2.2+dfsg.orig.tar.xz
 a5f225a735694540403eca2805f8b803 17280 science optional augustus_3.2.2+dfsg-1.debian.tar.xz
 de4728e4e4acf243758a63fffc92e8ef 14792524 science optional augustus-data_3.2.2+dfsg-1_all.deb
 a5eeff77d02b9e942f3e1c110b92b541 14616382 debug extra augustus-dbgsym_3.2.2+dfsg-1_amd64.deb
 b64e7f6f187d1699a5f5baec6f6ba6e4 17281252 doc optional augustus-doc_3.2.2+dfsg-1_all.deb
 e00b32d0a29fddb67e9bde33d20a19c7 1118628 science optional augustus_3.2.2+dfsg-1_amd64.deb

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