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Bug#815672: marked as done (ITP: spaced -- alignment-free sequence comparison using spaced words)

Your message dated Wed, 30 Mar 2016 11:00:22 +0000
with message-id <E1alDrK-0007dQ-8b@franck.debian.org>
and subject line Bug#815672: fixed in spaced 1.0.2+dfsg-1
has caused the Debian Bug report #815672,
regarding ITP: spaced -- alignment-free sequence comparison using spaced words
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
815672: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815672
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Team <debian-med@lists.debian.org>

* Package name    : spaced
  Version         : 1.0.2
  Upstream Author : Lars Hahn <lars.hahn@stud.uni-goettingen.de>
* URL             : http://spaced.gobics.de/
* License         : GPL
  Programming Lang: C++
  Description     : alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence
comparison. While most alignment-free algorithms compare the
word-composition of sequences, spaced uses a pattern of care and
don't care positions. The occurrence of a spaced word in a sequence is
then defined by the characters at the match positions only, while the
characters at the don't care positions are ignored. Instead of comparing
the frequencies of contiguous words in the input sequences, this new
approach compares the frequencies of the spaced words according to the
pre-defined pattern. An information-theoretic distance measure is then
used to define pairwise distances on the set of input sequences based
on their spaced-word frequencies. Systematic test runs on real and
simulated sequence sets have shown that, for phylogeny reconstruction,
this multiple-spaced-words approach is far superior to the classical
alignment-free approach based on contiguous word frequencies.

This package will be maintained by the DebianMed Team.

--- End Message ---
--- Begin Message --- 
Source: spaced
Source-Version: 1.0.2+dfsg-1

We believe that the bug you reported is fixed in the latest version of
spaced, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 815672@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Fabian Klötzl <kloetzl@evolbio.mpg.de> (supplier of updated spaced package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 28 Mar 2016 19:41:33 +0200
Source: spaced
Binary: spaced
Architecture: source amd64
Version: 1.0.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Fabian Klötzl <kloetzl@evolbio.mpg.de>
Description:
 spaced     - alignment-free sequence comparison using spaced words
Closes: 815672
Changes:
 spaced (1.0.2+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #815672)
   * Remove the precompiled binary via get-orig-source script
   * Add a manpage
   * Fix a problem if the compiler does not support OpenMP
   * Add autotools as proper build system
Checksums-Sha1:
 5c9ddb5e5f6b9b5922f69d68843e38297335e304 1932 spaced_1.0.2+dfsg-1.dsc
 b044b89c9c4e9ef76d7b4da64dcce5689d4892b5 28332 spaced_1.0.2+dfsg.orig.tar.xz
 4d2c495b9f588277671aabd7ef9349b4837be0b6 7336 spaced_1.0.2+dfsg-1.debian.tar.xz
 43e1482210f90891f65081cbffb1df4f255a39d0 399248 spaced-dbgsym_1.0.2+dfsg-1_amd64.deb
 d005b3b552adf699a4db75f0776aa0cdfbd68643 48182 spaced_1.0.2+dfsg-1_amd64.deb
Checksums-Sha256:
 8be19fdbdc2b00cdc8c49aa0afcfa78a58013f25738de3441a01c98abf4b68be 1932 spaced_1.0.2+dfsg-1.dsc
 15ef5281bc1b2833369831f808325da654a22868c09d0fe4d775cc1ae766def8 28332 spaced_1.0.2+dfsg.orig.tar.xz
 b576b3590098a03ba8271a208110c83f1b3c87db193a46b6e378df4809c3dc2b 7336 spaced_1.0.2+dfsg-1.debian.tar.xz
 f0b114b7fd15062d350887f2e9c3b25ed99e77cb5c02e4e6d743d5dc8b7b5a1c 399248 spaced-dbgsym_1.0.2+dfsg-1_amd64.deb
 a3807254c10750fc3c164b339e174d27438567307a84d884a46204a4bfe43724 48182 spaced_1.0.2+dfsg-1_amd64.deb
Files:
 9496a9942e302c9b82ea9409c5ccee2c 1932 science optional spaced_1.0.2+dfsg-1.dsc
 85acbee379b8d45eb72f89c2eb4d1187 28332 science optional spaced_1.0.2+dfsg.orig.tar.xz
 ecc4fd9fb0d8880f28bd9c7450ca922e 7336 science optional spaced_1.0.2+dfsg-1.debian.tar.xz
 a972a9b21c5cbb275269f97b6c023bb7 399248 debug extra spaced-dbgsym_1.0.2+dfsg-1_amd64.deb
 b84cb0dcbc00903836aa47d2e59b4ac4 48182 science optional spaced_1.0.2+dfsg-1_amd64.deb

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