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Bug#796644: marked as done (ITP: pbdagcon -- sequence consensus algorithm implementation based on directed acyclic graphs)

Your message dated Fri, 22 Jan 2016 11:00:36 +0000
with message-id <E1aMZSG-0004mp-Na@franck.debian.org>
and subject line Bug#796644: fixed in pbdagcon 0~20151114+git1d12e13+ds-1
has caused the Debian Bug report #796644,
regarding ITP: pbdagcon -- sequence consensus algorithm implementation based on directed acyclic graphs
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
796644: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=796644
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Control: block 787977 by -1

* Package name    : pbdagcon
  Version         : git1d12e13
  Upstream Author : Pacific Biosciences <devnet@pacificbiosciences.com>
* URL             : https://github.com/PacificBiosciences/pbdagcon
* License         : BSD**
  Programming Lang: C++, Python
  Description     : sequence consensus algorithm implementation based on directed acyclic graphs

pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus),
which is a sequence consensus algorithm based on using directed acyclic graphs
to encode multiple sequence alignment.
.
It uses the alignment information from blasr to align sequence reads to a
"backbone" sequence. Based on the underlying alignment directed acyclic graph,
it will be able to use the new information from the reads to find the
discrepancies between the reads and the "backbone" sequences. A dynamic
programming process is then applied to the DAG to find the optimum sequence of
bases as the consensus. The new consensus can be used as a new backbone
sequence to iteratively improve the consensus quality.

This package is part of the SMRTAnalysis suite and also a dependency of
wgs-assembler. It will be handled by the Debian Med team.

** I'm double-checking the license of this component at https://github.com/PacificBiosciences/pbdagcon/issues/40.

--- End Message ---
--- Begin Message --- 
Source: pbdagcon
Source-Version: 0~20151114+git1d12e13+ds-1

We believe that the bug you reported is fixed in the latest version of
pbdagcon, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 796644@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Afif Elghraoui <afif@ghraoui.name> (supplier of updated pbdagcon package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 11 Dec 2015 00:54:39 -0800
Source: pbdagcon
Binary: pbdagcon
Architecture: source amd64
Version: 0~20151114+git1d12e13+ds-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 pbdagcon   - sequence consensus using directed acyclic graphs
Closes: 796644
Changes:
 pbdagcon (0~20151114+git1d12e13+ds-1) unstable; urgency=low
 .
   * Initial release (Closes: #796644)
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Checksums-Sha256:
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Files:
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 18e784524bf4456c3b23721b4c024913 102936 science optional pbdagcon_0~20151114+git1d12e13+ds.orig.tar.xz
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 5aca707b7b5dbdbb6c5fba2713f5eb28 191544 science optional pbdagcon_0~20151114+git1d12e13+ds-1_amd64.deb

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