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Bug#804007: marked as done (ITP: bcftools -- utilities for genomic variant calling and manipulating VCF and BCF files)

Your message dated Thu, 21 Jan 2016 11:00:21 +0000
with message-id <E1aMCyT-000227-9Q@franck.debian.org>
and subject line Bug#804007: fixed in bcftools 1.2-1
has caused the Debian Bug report #804007,
regarding ITP: bcftools -- utilities for genomic variant calling and manipulating VCF and BCF files
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
804007: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804007
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

* Package name    : bcftools
  Version         : 1.2
  Upstream Author : Petr Danecek, Shane McCarthy and John Marshall
* URL             : http://samtools.github.io/bcftools/
* License         : GPL or MIT/X
  Programming Lang: C
  Description     : utilities for genomic variant calling and manipulating VCF and BCF files

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

Most commands accept VCF, bgzipped VCF and BCF with filetype detected
automatically even when streaming from a pipe. Indexed VCF and BCF will work
in all situations. Un-indexed VCF and BCF and streams will work in most,
but not all situations.

BCFtools is designed to work on a stream. It regards an input file "-" as the
standard input (stdin) and outputs to the standard output (stdout). Several
commands can thus be combined with Unix pipes.


This package will be managed by the Debian Med team.

--- End Message ---
--- Begin Message --- 
Source: bcftools
Source-Version: 1.2-1

We believe that the bug you reported is fixed in the latest version of
bcftools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 804007@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Afif Elghraoui <afif@ghraoui.name> (supplier of updated bcftools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 09 Nov 2015 23:44:39 -0800
Source: bcftools
Binary: bcftools
Architecture: source amd64
Version: 1.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 bcftools   - genomic variant calling and manipulation of VCF/BCF files
Closes: 804007
Changes:
 bcftools (1.2-1) unstable; urgency=low
 .
   * Initial release (Closes: #804007)
Checksums-Sha1:
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 fa6280426ae50acd70b98aa6acce3d0375c419e9 511625 bcftools_1.2.orig.tar.gz
 9f7ae3cca16a1fb7d10431eacee80c6bda44736f 8704 bcftools_1.2-1.debian.tar.xz
 2a48e7e9d197afcbfbd8a58f6b14336ffc5874e9 274058 bcftools_1.2-1_amd64.deb
Checksums-Sha256:
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 90ccd7dccfb0b2848b71f32fff073c420260e857b7feeb89c1fb4bfaba49bfba 511625 bcftools_1.2.orig.tar.gz
 2c1c500f9afad4ef8581882a621426b2224fa98523a5bc1914e10c872fc919a4 8704 bcftools_1.2-1.debian.tar.xz
 60d8bc4635dc9152e92c05a03d6dc8a8fd1397759dfb94131664a8309fb4f91b 274058 bcftools_1.2-1_amd64.deb
Files:
 ddccf43fc523e70f76df8b2696610f39 1987 science optional bcftools_1.2-1.dsc
 87efbd0092b6e4828c17842c9ae57ec9 511625 science optional bcftools_1.2.orig.tar.gz
 e90435731e9a3df0b740a22c3c43c901 8704 science optional bcftools_1.2-1.debian.tar.xz
 44eb7447d6cc96c31ddf4c51b25cb00f 274058 science optional bcftools_1.2-1_amd64.deb

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--- End Message ---
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