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Bug#800489: marked as done (ITP: ruby-fix-trinity-output -- Fix output fastq files from trinityrnaseq)

Your message dated Mon, 09 Nov 2015 12:00:23 +0000
with message-id <E1Zvl7X-0007c1-Rl@franck.debian.org>
and subject line Bug#800489: fixed in ruby-fix-trinity-output 1.0.0-1
has caused the Debian Bug report #800489,
regarding ITP: ruby-fix-trinity-output -- Fix output fastq files from trinityrnaseq
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
800489: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800489
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: "Debian Ruby Team" <debian-ruby@lists.debian.org>
Severity: wishlist
X-Debbugs-CC: debian-ruby@lists.debian.org

* Package name    : ruby-fix-trinity-output
  Version         : 1.0.0
  Upstream Author : Chris Boursnell <cmb211@cam.ac.uk>
* URL             : http://rubygems.org/gems/fix-trinity-output
* License         : MIT
  Programming Lang: Ruby
  Description     : Fix output fastq files from trinityrnaseq

trinityrnaseq outputs fastq files that have been 'corrected'
 
Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such as bowtie2 and snap-aligner. This script attempts to fix that and produce 2 properly paired fastq files and a fastq file containing single reads

This package is a dependency for 'transrate'.

This package will be maintained as part of the Debian Ruby packaging team.


--- End Message ---
--- Begin Message --- 
Source: ruby-fix-trinity-output
Source-Version: 1.0.0-1

We believe that the bug you reported is fixed in the latest version of
ruby-fix-trinity-output, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 800489@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <crusoe@ucdavis.edu> (supplier of updated ruby-fix-trinity-output package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


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Format: 1.8
Date: Sat, 19 Sep 2015 22:00:01 -0700
Source: ruby-fix-trinity-output
Binary: ruby-fix-trinity-output
Architecture: source all
Version: 1.0.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Ruby Extras Maintainers <pkg-ruby-extras-maintainers@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
 ruby-fix-trinity-output - Fix output fastq files from trinityrnaseq
Closes: 800489
Changes:
 ruby-fix-trinity-output (1.0.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #800489)
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