Bug#798442: marked as done (ITP: kraken -- assigning taxonomic labels to short DNA sequences)
Your message dated Thu, 17 Sep 2015 10:00:18 +0000
with message-id <E1ZcVzG-0003RM-J2@franck.debian.org>
and subject line Bug#798442: fixed in kraken 0.10.5~beta-1
has caused the Debian Bug report #798442,
regarding ITP: kraken -- assigning taxonomic labels to short DNA sequences
to be marked as done.
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If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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798442: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798442
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : kraken
Version : 0.10.5~beta
Upstream Author : Derrick Wood <dwood@cs.jhu.edu>
* URL : http://ccb.jhu.edu/software/kraken/
* License : GPL
Programming Lang: C++, Perl
Description : assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies. Previous
attempts by other bioinformatics software to accomplish this task have
often used sequence alignment or machine learning techniques that were
quite slow, leading to the development of less sensitive but much faster
abundance estimation programs. Kraken aims to achieve high sensitivity
and high speed by utilizing exact alignments of k-mers and a novel
classification algorithm.
.
In its fastest mode of operation, for a simulated metagenome of 100 bp
reads, Kraken processed over 4 million reads per minute on a single
core, over 900 times faster than Megablast and over 11 times faster than
the abundance estimation program MetaPhlAn. Kraken's accuracy is
comparable with Megablast, with slightly lower sensitivity and very high
precision.
This package is maintained by the Debian Med team at
git://anonscm.debian.org/debian-med/kraken.git
--- End Message ---
--- Begin Message ---
Source: kraken
Source-Version: 0.10.5~beta-1
We believe that the bug you reported is fixed in the latest version of
kraken, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 798442@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated kraken package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 09 Sep 2015 14:10:52 +0200
Source: kraken
Binary: kraken
Architecture: source amd64
Version: 0.10.5~beta-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
kraken - assigning taxonomic labels to short DNA sequences
Closes: 798442
Changes:
kraken (0.10.5~beta-1) unstable; urgency=low
.
* Initial release (Closes: #798442)
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