Bug#794607: marked as done (ITP: sortmerna -- tool for filtering, mapping and OTU-picking NGS reads)
Your message dated Thu, 27 Aug 2015 11:00:31 +0000
with message-id <E1ZUuv1-0001rY-4q@franck.debian.org>
and subject line Bug#794607: fixed in sortmerna 2.0-1
has caused the Debian Bug report #794607,
regarding ITP: sortmerna -- tool for filtering, mapping and OTU-picking NGS reads
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
794607: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=794607
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : sortmerna
Version : 2.0
Upstream Author : Mengyao Zhao <zhangmp@bc.edu>
* URL : http://bioinfo.lifl.fr/RNA/sortmerna/
* License : MIT
Programming Lang: C++
Description : tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and
OTU-picking NGS reads. The core algorithm is based on approximate seeds and
allows for fast and sensitive analyses of nucleotide sequences. The main
application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Additional applications include OTU-picking and taxonomy assignation available
through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or
multiple rRNA database file(s), and sorts apart rRNA and rejected reads into
two files specified by the user. Optionally, it can provide high quality local
alignments of rRNA reads against the rRNA database. SortMeRNA works with
Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and
BLAST-like alignments.
Remark: This package was prepared by Tim Booth of BioLinux as a predependency
of the new version of qiime. It is maintained at
svn://anonscm.debian.org/debian-med/trunk/packages/sortmerna/trunk/
--- End Message ---
--- Begin Message ---
Source: sortmerna
Source-Version: 2.0-1
We believe that the bug you reported is fixed in the latest version of
sortmerna, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 794607@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated sortmerna package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 04 Aug 2015 21:27:07 +0200
Source: sortmerna
Binary: sortmerna
Architecture: source amd64
Version: 2.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
sortmerna - tool for filtering, mapping and OTU-picking NGS reads
Closes: 794607
Changes:
sortmerna (2.0-1) unstable; urgency=medium
.
* Initial upload to Debian (Closes: #794607)
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7ca0bd4049f866a6c5ea00d8385f038248fd69e7 16137730 sortmerna_2.0.orig.tar.gz
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d7fe65491d2b2832a0741f20ba6629bc3ee3a4a9 533774 sortmerna_2.0-1_amd64.deb
Checksums-Sha256:
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Files:
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22dd9668d4bae9376590783828033abf 16728 science optional sortmerna_2.0-1.debian.tar.xz
752bfbed2f8fd2e14f9d8ad66d056528 533774 science optional sortmerna_2.0-1_amd64.deb
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