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Bug#802325: marked as done (ITP: prottest -- selection of best-fit models of protein evolution)

Your message dated Tue, 27 Oct 2015 13:00:18 +0000
with message-id <E1Zr3rO-0005gd-Qa@franck.debian.org>
and subject line Bug#802325: fixed in prottest 3.4.1+dfsg-1
has caused the Debian Bug report #802325,
regarding ITP: prottest -- selection of best-fit models of protein evolution
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
802325: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=802325
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : prottest
  Version         : 3.4
  Upstream Author : Diego Darriba <diegodl84@gmail.com>
* URL             : https://github.com/ddarriba/prottest3
* License         : GPL
  Programming Lang: Java
  Description     : selection of best-fit models of protein evolution
 PROTTEST (ModelTest's relative) is a program for selecting the model of
 protein evolution that best fits a given set of sequences (alignment).
 This java program is based on the Phyml program (for maximum likelihood
 calculations and optimization of parameters) and uses the PAL library as
 well. Models included are empirical substitution matrices (such as WAG,
 LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam,
 MtArt, HIVb, and HIVw) that indicate relative rates of amino acid
 replacement, and specific improvements (+I:invariable sites, +G: rate
 heterogeneity among sites, +F: observed amino acid frequencies) to
 account for the evolutionary constraints impossed by conservation of
 protein structure and function. ProtTest uses the Akaike Information
 Criterion (AIC) and other statistics (AICc and BIC) to find which of the
 candidate models best fits the data at hand.


This package will be maintained by the Debian Med team at
   git://anonscm.debian.org/debian-med/prottest.git

--- End Message ---
--- Begin Message --- 
Source: prottest
Source-Version: 3.4.1+dfsg-1

We believe that the bug you reported is fixed in the latest version of
prottest, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 802325@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated prottest package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 26 Oct 2015 08:09:37 +0100
Source: prottest
Binary: prottest
Architecture: source all
Version: 3.4.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 prottest   - selection of best-fit models of protein evolution
Closes: 802325
Changes:
 prottest (3.4.1+dfsg-1) unstable; urgency=medium
 .
   *Initial release (Closes: #802325)
Checksums-Sha1:
 47c22df93f2f7a4db42898e9dae85beb129e8294 2081 prottest_3.4.1+dfsg-1.dsc
 04be835eb1cc2e6eaad8230c8647b20d9bad9091 197256 prottest_3.4.1+dfsg.orig.tar.xz
 41933c5e77a3a601a2df1241adb76074a8fe378b 5364 prottest_3.4.1+dfsg-1.debian.tar.xz
 523927340af743dbf632e10dab5423e3442236ad 253176 prottest_3.4.1+dfsg-1_all.deb
Checksums-Sha256:
 5e7609c2d93a7675e19eee265848d248bf5faa29aec2bd0cc801916e3f486604 2081 prottest_3.4.1+dfsg-1.dsc
 cb7d13a7aab07a79ece6c169c644f64a2cf368adabcbb72632a5efdd06cb900d 197256 prottest_3.4.1+dfsg.orig.tar.xz
 925d13d932c59b9ca9c584c5eb36369138d59f8ef6627b6005aefcdf0d0d79ed 5364 prottest_3.4.1+dfsg-1.debian.tar.xz
 049ca72f59cff8f0c792e936def34f8f84ead1038aac7aa340bd63884e589165 253176 prottest_3.4.1+dfsg-1_all.deb
Files:
 792f29f3fcdac6792c09b570e850a412 2081 science optional prottest_3.4.1+dfsg-1.dsc
 84ebf5d097297ba7d18cdf7c4b489950 197256 science optional prottest_3.4.1+dfsg.orig.tar.xz
 597e7d2f81e6c9a3ae8fd0d14863fa29 5364 science optional prottest_3.4.1+dfsg-1.debian.tar.xz
 abad9e31b0c13002fdd980778083d1ca 253176 science optional prottest_3.4.1+dfsg-1_all.deb

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--- End Message ---
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