Bug#801722: marked as done (ITP: python-pyvcf -- Variant Call Format (VCF) parser for Python)
Your message dated Fri, 16 Oct 2015 22:00:32 +0000
with message-id <E1ZnD3A-0000Jy-6V@franck.debian.org>
and subject line Bug#801722: fixed in python-pyvcf 0.6.7-1
has caused the Debian Bug report #801722,
regarding ITP: python-pyvcf -- Variant Call Format (VCF) parser for Python
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
801722: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=801722
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : python-pyvcf
Version : 0.6.7
Upstream Author : James Casbon <casbon@gmail.com>
* URL : https://pypi.python.org/pypi/PyVCF
* License : BSD
Programming Lang: Python
Description : Variant Call Format (VCF) parser for Python
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
This package is maintained by the Debian Med team at
svn://anonscm.debian.org/debian-med/trunk/packages/python-pyvcf/trunk/
--- End Message ---
--- Begin Message ---
Source: python-pyvcf
Source-Version: 0.6.7-1
We believe that the bug you reported is fixed in the latest version of
python-pyvcf, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 801722@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated python-pyvcf package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 14 Oct 2015 22:58:18 +0200
Source: python-pyvcf
Binary: python-pyvcf python3-pyvcf pyvcf python-pyvcf-examples
Architecture: source all amd64
Version: 0.6.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python-pyvcf - Variant Call Format (VCF) parser for Python
python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python
python3-pyvcf - Variant Call Format (VCF) parser for Python 3
pyvcf - helper scripts for Variant Call Format (VCF) parser
Closes: 801722
Changes:
python-pyvcf (0.6.7-1) unstable; urgency=medium
.
* Initial upload (Closes: #801722)
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