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Bug#795822: marked as done (ITP: python-cutadapt -- cleaner for biological high sequencing data reads)

Your message dated Fri, 04 Sep 2015 07:00:16 +0000
with message-id <E1ZXkyu-0005hY-CX@franck.debian.org>
and subject line Bug#795822: fixed in python-cutadapt 1.8.3-1
has caused the Debian Bug report #795822,
regarding ITP: python-cutadapt -- cleaner for biological high sequencing data reads
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
795822: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795822
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <olivier.sallou@irisa.fr>
X-Debbugs-Cc: debian-med@lists.debian.org

* Package name    : python-cutadapt
  Version         : 1.8.3
  Upstream Author : Marcel Martin <marcel.martin@scilifelab.se>
* URL             : http://pypi.python.org/pypi/cutadapt
* License         : MIT
  Programming Lang: Python
  Description     : cleaner for biological high sequencing data reads

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3’ sequencing adapter because the read is longer than the molecule that is sequenced. Amplicon reads start with a primer sequence. Poly-A tails are useful for pulling out RNA from your sample, but often you don’t want them to be in your reads.

Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapter sequences can contain IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, you can also just demultiplex your input data, without removing adapter sequences at all.

Cutadapt comes with an extensive suite of automated tests and is available under the terms of the MIT license.

Package will be managed under DebianMed team

--- End Message ---
--- Begin Message --- 
Source: python-cutadapt
Source-Version: 1.8.3-1

We believe that the bug you reported is fixed in the latest version of
python-cutadapt, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 795822@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated python-cutadapt package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 17 Aug 2015 09:09:04 +0200
Source: python-cutadapt
Binary: python-cutadapt python3-cutadapt
Architecture: source amd64
Version: 1.8.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
 python-cutadapt - Clean biological sequences from high-throughput sequencing reads
 python3-cutadapt - Clean biological sequences from high-throughput sequencing reads
Closes: 795822
Changes:
 python-cutadapt (1.8.3-1) unstable; urgency=low
 .
   * Initial release (Closes: #795822)
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