Bug#793585: marked as done (ITP: ea-utils -- command-line tools for processing biological sequencing data)
Your message dated Wed, 29 Jul 2015 10:00:15 +0000
with message-id <E1ZKO9n-0006DS-Fp@franck.debian.org>
and subject line Bug#793585: fixed in ea-utils 1.1.2+dfsg-1
has caused the Debian Bug report #793585,
regarding ITP: ea-utils -- command-line tools for processing biological sequencing data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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793585: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=793585
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : ea-utils
Version : 1.1.2
Upstream Author : Erik Aronesty <erik@q32.com>
* URL : https://code.google.com/p/ea-utils/
* License : MIT
Programming Lang: C
Description : command-line tools for processing biological sequencing data
i Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
This package was prepared by Tim Booth for BioLinux to update the qiime
package. It is taken over into the Debian Med team and will be maintained
at
git://anonscm.debian.org/debian-med/ea-utils.git
--- End Message ---
--- Begin Message ---
Source: ea-utils
Source-Version: 1.1.2+dfsg-1
We believe that the bug you reported is fixed in the latest version of
ea-utils, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 793585@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated ea-utils package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 26 Jul 2015 17:33:18 +0200
Source: ea-utils
Binary: ea-utils
Architecture: source amd64
Version: 1.1.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
ea-utils - command-line tools for processing biological sequencing data
Closes: 793585
Changes:
ea-utils (1.1.2+dfsg-1) unstable; urgency=medium
.
* Initial upload to Debian (Closes: #793585)
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