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Bug#778838: marked as done (ITP: seqprep -- stripping adaptors and/or merging paired reads of DNA sequences with overlap)

Your message dated Sat, 20 Jun 2015 17:00:20 +0000
with message-id <E1Z6M7w-0002o9-Ql@franck.debian.org>
and subject line Bug#778838: fixed in seqprep 1.1-1
has caused the Debian Bug report #778838,
regarding ITP: seqprep -- stripping adaptors and/or merging paired reads of DNA sequences with overlap
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
778838: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=778838
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : seqprep
  Version         : 1.1
  Upstream Author : John St. John <jstjohn@soe.ucsc.edu>
* URL             : http://seqanswers.com/wiki/SeqPrep
* License         : MIT
  Programming Lang: C
  Description     : stripping adaptors and/or merging paired reads of DNA sequences with overlap
 SeqPrep is a program to merge paired end Illumina reads that are overlapping
 into a single longer read. It may also just be used for its adapter trimming
 feature without doing any paired end overlap. When an adapter sequence is
 present, that means that the two reads must overlap (in most cases) so they
 are forcefully merged. When reads do not have adapter sequence they must be
 treated with care when doing the merging, so a much more specific approach is
 taken. The default parameters were chosen with specificity in mind, so that
 they could be ran on libraries where very few reads are expected to overlap.
 It is always safest though to save the overlapping procedure for libraries
 where you have some prior knowledge that a significant portion of the reads
 will have some overlap.


This package was prepared by Tim Booth from BioLinux and will be maintained
by the Debian Med team at

   svn://anonscm.debian.org/debian-med/trunk/packages/seqprep/trunk/

--- End Message ---
--- Begin Message --- 
Source: seqprep
Source-Version: 1.1-1

We believe that the bug you reported is fixed in the latest version of
seqprep, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 778838@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated seqprep package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 20 Feb 2015 13:49:15 +0100
Source: seqprep
Binary: seqprep seqprep-data
Architecture: source amd64 all
Version: 1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 seqprep    - stripping adaptors and/or merging paired reads of DNA sequences w
 seqprep-data - example data set for seqprep - only used for testing
Closes: 778838
Changes:
 seqprep (1.1-1) unstable; urgency=medium
 .
   * Initial Upload to Debian
     Closes: #778838
Checksums-Sha1:
 04efb138c94feea85b31915a49e9f4def428fc88 2083 seqprep_1.1-1.dsc
 5b303b681140334737ac23da8fc70b35478d1e3d 37176949 seqprep_1.1.orig.tar.gz
 7a2da0b7a7bd523f34d4053b194d9afd57bec684 8084 seqprep_1.1-1.debian.tar.xz
 0eeecf12c95b1e7ab7761310d18e1cbac936e4a3 26498 seqprep_1.1-1_amd64.deb
 d34aa040bd111a32d36ae35c8b8741b83b7cfdcd 34946668 seqprep-data_1.1-1_all.deb
Checksums-Sha256:
 7853faaf9f36a9d62fee34eca63dc9e2e6a959d5348017e30760bec34157d683 2083 seqprep_1.1-1.dsc
 ef96c58bb211efb27c1d37f92f934998b49e6fdf917594b860e18903457c03e0 37176949 seqprep_1.1.orig.tar.gz
 7ed01116ea1e6a94da55493c2e08e2f5a662ee487e3c06bfb7e46744a9f0f7d7 8084 seqprep_1.1-1.debian.tar.xz
 2f670603b8051b3402159f44a85918a2c10355065338d8d9e2cc9e9e07b2bd7c 26498 seqprep_1.1-1_amd64.deb
 a7790c64197636881f4b7a721f7a661138fad03eeac15ee9bc3dc873d12738f2 34946668 seqprep-data_1.1-1_all.deb
Files:
 21b8c348462f2bd9e2884f40b4dcbcb8 2083 science optional seqprep_1.1-1.dsc
 42bd8e62e8bf99befb37ed29ce047115 37176949 science optional seqprep_1.1.orig.tar.gz
 c3ad31fab67fd4e1274c179b1355cb22 8084 science optional seqprep_1.1-1.debian.tar.xz
 a35475f49b7be7df6dd367808d05fad2 26498 science optional seqprep_1.1-1_amd64.deb
 88ebab05fa4481aac0e2b7068a720fe1 34946668 science extra seqprep-data_1.1-1_all.deb

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--- End Message ---
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