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Bug#783101: marked as done (ITP: mauvealigner -- multiple genome alignment algorithms)

Your message dated Sat, 20 Jun 2015 12:00:13 +0000
with message-id <E1Z6HRV-00010v-OP@franck.debian.org>
and subject line Bug#783101: fixed in progressivemauve 1.2.0+4713-1
has caused the Debian Bug report #783101,
regarding ITP: mauvealigner -- multiple genome alignment algorithms
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
783101: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=783101
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : mauvealigner
  Version         : 1.2.0+4713
  Upstream Author : Aaron Darling <darling@cs.wisc.edu>
* URL             : http://sourceforge.net/p/mauve/code/HEAD/tree/mauveAligner/
* License         : GPL
  Programming Lang: C++
  Description     : multiple genome alignment algorithms
 The mauveAligner and progressiveMauve alignment algorithms have been
 implemented as command-line programs included with the downloadable Mauve
 software.  When run from the command-line, these programs provide options
 not yet available in the graphical interface.
 .
 Mauve is a system for efficiently constructing multiple genome alignments
 in the presence of large-scale evolutionary events such as rearrangement
 and inversion. Multiple genome alignment provides a basis for research
 into comparative genomics and the study of evolutionary dynamics.  Aligning
 whole genomes is a fundamentally different problem than aligning short
 sequences.
 .
 Mauve has been developed with the idea that a multiple genome aligner
 should require only modest computational resources. It employs algorithmic
 techniques that scale well in the amount of sequence being aligned. For
 example, a pair of Y. pestis genomes can be aligned in under a minute,
 while a group of 9 divergent Enterobacterial genomes can be aligned in
 a few hours.
 .
 Mauve computes and interactively visualizes genome sequence comparisons.
 Using FastA or GenBank sequence data, Mauve constructs multiple genome
 alignments that identify large-scale rearrangement, gene gain, gene loss,
 indels, and nucleotide substutition.
 .
 Mauve is developed at the University of Wisconsin.

Remark: This package is maintained by the Debian Med team at
  Vcs-Git: git://anonscm.debian.org/debian-med/mauvealigner.git

--- End Message ---
--- Begin Message --- 
Source: progressivemauve
Source-Version: 1.2.0+4713-1

We believe that the bug you reported is fixed in the latest version of
progressivemauve, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 783101@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated progressivemauve package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 20 May 2015 08:31:55 +0200
Source: progressivemauve
Binary: progressivemauve
Architecture: source amd64
Version: 1.2.0+4713-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 progressivemauve - multiple genome alignment algorithms
Closes: 783101
Changes:
 progressivemauve (1.2.0+4713-1) unstable; urgency=medium
 .
   * Initial release to Debian (Closes: #783101)
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Files:
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